PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02811.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 406aa    MW: 43572.3 Da    PI: 8.6848
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02811.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.96.1e-10189230344
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                     + k++rr+++NReAAr+sR RKka+i eLe    +L +  ++
  Pahal.D02811.2 189 DQKVQRRLAQNREAARKSRMRKKAYIVELESSRTKLAQLEQE 230
                     679**************************9765555554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0018187240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.461189233IPR004827Basic-leucine zipper domain
PfamPF001704.3E-7190231IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.8E-9191235No hitNo description
SuperFamilySSF579592.18E-7191234No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
PfamPF141449.8E-29273348IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MATRGVPRAR HQQQRLVRLR RERLSLLARR VRLANALLPC PRLVCRAEQG AGGYHHYHGV  60
GDGALLPELP RSPNPSSKSS SNLTAATFVQ PLAVAHGGVA PSFGMAPPAV AAAADDARFC  120
LPWAAAGAAP FENWGDSGIV VTSPLTETTC TDADDASGDR QHAQGGAITQ SVAAYMDSCA  180
ASKEGPCRDQ KVQRRLAQNR EAARKSRMRK KAYIVELESS RTKLAQLEQE LQRARQQGMF  240
IASGRTGDHG GSTGGASAFD LEYARWLDEH QRHMTDLRVA LGAQIGDDDL RVLVDGAMLH  300
YEQMFRLKGA ATRSDVFHVL SGMWMSPAER FFMWLGGFRS SELLKVLARH VEPLTEQQLV  360
GICSLQQSSQ QAEDALSQGM EALQQALADT LAAAAAGAGA GAPRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851450.0BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.
GenBankKJ7275600.0KJ727560.1 Zea mays clone pUT5420 bZIP transcription factor (bZIP57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812128.10.0transcription factor TGAL3-like
SwissprotQ5Z6N91e-127TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A3L6PD600.0A0A3L6PD60_PANMI; Transcription factor HBP-1b(C38)-like
STRINGPavir.J20659.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.33e-78TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]