PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02811.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 419aa    MW: 45018 Da    PI: 8.5817
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02811.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.6e-11202243344
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                     +++++rr+++NReAAr+sR RKka+i eLe    +L +  ++
  Pahal.D02811.1 202 SWQVQRRLAQNREAARKSRMRKKAYIVELESSRTKLAQLEQE 243
                     6899*************************9765555554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-4200253IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.737202246IPR004827Basic-leucine zipper domain
PfamPF001702.9E-8203244IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.81E-7205247No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-8206248No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
PfamPF141441.0E-28286361IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MATRGVPRAR HQQQRLVRLR RERLSLLARR VRLANALLPC PRLVCRAEQG AGGYHHYHGV  60
GDGALLPELP RSPNPSSKSS SNLTAATFVQ PLAVAHGGVA PSFGMAPPAV AAAADDARFC  120
LPWAAAGAAP FENWGDSGIV VTSPLTETTC TDADDASGDR QHAQGGAITQ SVAAYMDSCA  180
ASKEGPCRDQ KCLWSVLSVV GSWQVQRRLA QNREAARKSR MRKKAYIVEL ESSRTKLAQL  240
EQELQRARQQ GMFIASGRTG DHGGSTGGAS AFDLEYARWL DEHQRHMTDL RVALGAQIGD  300
DDLRVLVDGA MLHYEQMFRL KGAATRSDVF HVLSGMWMSP AERFFMWLGG FRSSELLKVL  360
ARHVEPLTEQ QLVGICSLQQ SSQQAEDALS QGMEALQQAL ADTLAAAAAG AGAGAPRA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851450.0BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.
GenBankKJ7275600.0KJ727560.1 Zea mays clone pUT5420 bZIP transcription factor (bZIP57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660509.20.0transcription factor TGAL3
SwissprotQ5Z6N91e-123TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A2T8JE640.0A0A2T8JE64_9POAL; Uncharacterized protein
TrEMBLA0A3L6PD600.0A0A3L6PD60_PANMI; Transcription factor HBP-1b(C38)-like
STRINGPavir.J20659.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.31e-75TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]