PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02797.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 447aa    MW: 47980.5 Da    PI: 4.732
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02797.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.6e-082465338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  Pahal.D02797.1 24 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 65
                    578*****************************6567777776 PP
2CCT67.92.7e-23390433144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Pahal.D02797.1 390 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 433
                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.2E-112269IPR000315B-box-type zinc finger
PROSITE profilePS5011910.482269IPR000315B-box-type zinc finger
PfamPF006431.3E-62566IPR000315B-box-type zinc finger
CDDcd000218.72E-92769No hitNo description
PROSITE profilePS5101716.083390432IPR010402CCT domain
PfamPF062036.1E-18390432IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MIATAGSSAK KEAAAAAAMG GKAARACDGC LRRRARWYCA ADDAFLCQGC DTSVHSANPL  60
ARRHERLRLR PTSPPGAPPP PAKREPRDEV VPAWFKRKAR TPRGGHTKSL GQVLSRRLVV  120
PEAAGGDSPE GRNGEGEVEE EEEQLLYRVP VFDPALAEFC SPPPLEEAAA VAPSCNEDGA  180
VEDPAKPDPA APAAPQAQLF PDGHANFEPT DAELREFAAD MEALLGRGLN DGNEEDSSFY  240
METLGLLDPV DDDAARVKVE IDGGGACETS GTLACGFELE AEASDEMLDI DFDYGSPDQE  300
TPPEDEKAGS NDTSADAQFL QTSLSLTLNY EAIIQSWGSS PWTGGGERPH VKLDDSWPHD  360
FTGMWLVGGM VGHGGEELCA PRLGMMDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE  420
KRPRMKGRFV KRTTAGGSSV AVAGVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400416RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813938.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2S3HKR70.0A0A2S3HKR7_9POAL; Uncharacterized protein
STRINGPavir.J30409.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-70B-box type zinc finger protein with CCT domain