PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02777.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 314aa    MW: 35253.6 Da    PI: 6.9331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02777.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding408.9e-13139182447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT+eE+ +++++   +G g+Wk I+r++  ++t+ q+ s+ qky
   Pahal.D02777.1 139 WTKEEHRKFLKGLDAYGRGSWKNISRHFLPNKTPVQICSHAQKY 182
                      ****************************99*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.143131187IPR017930Myb domain
SMARTSM007172.0E-9135185IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-14137188IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-12138185IPR006447Myb domain, plants
CDDcd001677.98E-10139183No hitNo description
Gene3DG3DSA:1.10.10.603.7E-11139184IPR009057Homeodomain-like
PfamPF002495.8E-10139182IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDPSFNGEWS ASEIETVKSH IAGNNTNTYA NNMNKKHTDI MDELQAIFPL KEKHQVTNLY  60
VELMMEMMHR MQGGNQHVVT NNNIMIGNFG TPLEDPSMGN MEVLCDPLME EMEAIRKGVE  120
VPQRHPMPQK EKQHAVRFWT KEEHRKFLKG LDAYGRGSWK NISRHFLPNK TPVQICSHAQ  180
KYFRRLQNPN KKQRYSINDV GLYDTELGVQ NNASGWEGHT ITGGAYNPNH YGSGDQPAAM  240
NNLSQVTSPL MHITGQASSS QTATLANGSR QQMGASSSSV VPLMEGAGSH MGWTDDQQGD  300
FFANQWIMNM HMN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813224.10.0myb-like protein H
TrEMBLA0A2S3HKS50.0A0A2S3HKS5_9POAL; Uncharacterized protein
STRINGPavir.Db01742.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.13e-21MYB family protein