PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02605.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 295aa    MW: 32935.9 Da    PI: 8.5928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02605.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.3e-2379172187
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f k+ltpsdv+k++rl +p++fae++         +    ++  lt+ed ++g  W + ++ +++s +yvltkGW  F k+++L+ gD+v F+++
  Pahal.D02605.1  79 FSKILTPSDVGKLNRLLIPRQFAEKYfpkisktksD---GSDPILTFEDsSTGLIWHFCFSLWRSSTTYVLTKGWPTFIKEKKLNNGDIVSFYRS 170
                     88**************************98875432...344579***97889****************************************65 PP

                     SS CS
              B3  86 gr 87 
                      +
  Pahal.D02605.1 171 VD 172
                     44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-3168174IPR015300DNA-binding pseudobarrel domain
CDDcd100179.65E-2077184No hitNo description
SuperFamilySSF1019362.22E-2378185IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-1579194IPR003340B3 DNA binding domain
PROSITE profilePS5086312.60579188IPR003340B3 DNA binding domain
PfamPF023621.7E-1979171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MALLATRISR EMGQQIEKAP LCENPFHMVN PFSSRLYVSP WATMSAPVFP LGLSNSHGGL  60
GLCGASKRGR EVIEMEFLFS KILTPSDVGK LNRLLIPRQF AEKYFPKISK TKSDGSDPIL  120
TFEDSSTGLI WHFCFSLWRS STTYVLTKGW PTFIKEKKLN NGDIVSFYRS VDKSVGMNRF  180
FIHIKPHVDI SSVPHHNTIL MFTPSGLLND EWVREGLGFS NCYRFEPTWK PLSFGSGGLE  240
PSMTLMPQPN MSPMSFGNSM GKAGKHLRLF GVDIDVPPCA NCDDFHNEWS NGVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-29721821108B3 domain-containing transcription factor NGA1
5os9_B1e-29721821108B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3GNZ70.0A0A2S3GNZ7_9POAL; Uncharacterized protein
STRINGPavir.Ea01472.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16167813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-37B3 family protein