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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D02548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 63aa MW: 7267.65 Da PI: 9.6829 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.7 | 1.9e-11 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+vkgLtl h+kSHLQkYRl Pahal.D02548.1 1 MRTMGVKGLTLFHLKSHLQKYRL 23 689*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MRTMGVKGLT LFHLKSHLQK YRLGRQSGKE MTEQSKDGKL RCIDDTLNWY ALLIPCCMLF 60 VY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039053 | 3e-36 | BT039053.1 Zea mays full-length cDNA clone ZM_BFb0367F20 mRNA, complete cds. | |||
GenBank | EU967839 | 3e-36 | EU967839.1 Zea mays clone 306497 myb family transcription factor-related protein mRNA, complete cds. | |||
GenBank | JX469981 | 3e-36 | JX469981.1 Zea mays subsp. mays clone UT3341 G2-like transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583325.1 | 7e-19 | protein PHR1-LIKE 2-like isoform X2 | ||||
Refseq | XP_025821023.1 | 7e-19 | protein PHR1-LIKE 2-like | ||||
Swissprot | Q94A57 | 4e-16 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A2I0WUB8 | 2e-17 | A0A2I0WUB8_9ASPA; Myb family transcription factor APL | ||||
TrEMBL | A0A2T7D6B3 | 2e-17 | A0A2T7D6B3_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8IGC6 | 2e-17 | A0A2T8IGC6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6PSS7 | 2e-17 | A0A3L6PSS7_PANMI; Myb family transcription factor APL-like | ||||
TrEMBL | A0A426YUN4 | 1e-17 | A0A426YUN4_ENSVE; Uncharacterized protein | ||||
STRING | Pavir.J35437.1.p | 4e-34 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 2e-18 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D02548.1 |
Publications ? help Back to Top | |||
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