PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02531.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 395aa    MW: 43260.9 Da    PI: 4.7727
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02531.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.4e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien+ nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs+++kl  +s
  Pahal.D02531.1  9 KRIENNVNRQVTFSKRRNGLIKKAYELSVLCDIDIALILFSPSDKLNHFS 58
                    79********************************************9997 PP
2K-box21.41e-08111179977
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                       +++ e+lq+e++k + +++ L++ +R +  + +   s++e +  e+ L + l+++ ++K+ ll++++
  Pahal.D02531.1 111 PVDSNIEELQHEIRKYQHQVQALEERLRMFEPDLVALASMNEVEATEKFLMETLTRVEERKKYLLCNHM 179
                     568999********************8888888888889**************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.002161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-28283IPR002100Transcription factor, MADS-box
CDDcd002654.81E-35275No hitNo description
PRINTSPR004043.3E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGRVKLQIKR IENNVNRQVT FSKRRNGLIK KAYELSVLCD IDIALILFSP SDKLNHFSGR  60
RSIEDVITKY INLPEHDRGG IVRNREYLIK TLTQLKRESD IAEQLTPNKG PVDSNIEELQ  120
HEIRKYQHQV QALEERLRMF EPDLVALASM NEVEATEKFL METLTRVEER KKYLLCNHMG  180
PFDPSPADMQ QVFGLLPAPP QQHEQQGDMG VSAFGVGGDV VSWFADAMPG AGPSIFAGPD  240
PILAFRDQAI FDSLRRDAGV DPGMAAMCHV DQHGGGPSDD WQQAYTSAEL LSALIPSTPF  300
PLDDQVAARD DELDKTSTTA LQPRFSVHEL EAVIQDSMAP VLAPPMVPPP PHVHEQVEAS  360
AGSCSNVPPP GGDSAAAAAQ EQQHGLPDGA VNIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-18175174MEF2 CHIMERA
6byy_B2e-18175174MEF2 CHIMERA
6byy_C2e-18175174MEF2 CHIMERA
6byy_D2e-18175174MEF2 CHIMERA
6bz1_A2e-18175174MEF2 CHIMERA
6bz1_B2e-18175174MEF2 CHIMERA
6bz1_C2e-18175174MEF2 CHIMERA
6bz1_D2e-18175174MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813206.10.0agamous-like MADS-box protein AGL104
TrEMBLA0A2S3HK870.0A0A2S3HK87_9POAL; Uncharacterized protein
TrEMBLA0A2T7E0R20.0A0A2T7E0R2_9POAL; Uncharacterized protein
STRINGPavir.Db01574.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.16e-71AGAMOUS-like 66