PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02517.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 322aa    MW: 35999.7 Da    PI: 7.1943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02517.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l ++++++G g+W++ ++  g++R++k+c++rw +yl
   Pahal.D02517.1 14 KGPWTPEEDHKLMNYIQKHGHGSWRALPELAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding538e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++ +++++  lG++ W++Ia+ ++ gRt++++k++w+++l
   Pahal.D02517.1  67 RGKFSKDEEQTILQLHSILGNK-WSAIAKNLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-26564IPR009057Homeodomain-like
PROSITE profilePS5129418.212961IPR017930Myb domain
SuperFamilySSF466892.17E-3111108IPR009057Homeodomain-like
SMARTSM007172.8E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-171461IPR001005SANT/Myb domain
CDDcd001671.65E-101661No hitNo description
PROSITE profilePS5129426.70262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2765117IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002496.2E-1667112IPR001005SANT/Myb domain
CDDcd001671.08E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRPPCCDEK GLKKGPWTPE EDHKLMNYIQ KHGHGSWRAL PELAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SKDEEQTILQ LHSILGNKWS AIAKNLPGRT DNEIKNFWNT HLRKKLIQMG  120
IDPMTHRPRT DFFAALPQLI ALANLHQLIE QQQWDGHTTM SQTEAVQAAN HQYMQTMFQT  180
AASITPNPTT ISSLTADLEQ ISHLNPQHML SSTLLESTGG EGVARQVPHN QMPHTFFEQP  240
VSNINLSSDN NVSSSEQCHV EGGSSSRKSM LPSDNSLPPL TDMSASKPCY AISTTKCGAS  300
STLSPSWSEI LLDEELMREF E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811434.10.0transcription factor MYB93-like
SwissprotQ9S9Z21e-102MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2S3HK700.0A0A2S3HK70_9POAL; Uncharacterized protein
STRINGPavir.Da01312.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-105myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]