PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D02490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 35552.2 Da PI: 8.8777 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8.3e-14 | 129 | 179 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++h ++Er+RR+++N+ ++ Lr l+P++ ++++ + a+i+ A++++k+L+ Pahal.D02490.1 129 RQNHIAVERNRRRQMNEYLAALRALMPPS---YARRGDQASIVGGAIDFVKELE 179 99***************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-16 | 126 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 127 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.35E-13 | 129 | 183 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-14 | 129 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-11 | 129 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 133 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MALLEAVVFP PDHPPRVPCC RSCGTSCVLS GYGVAAAGEF EGIIERGVVV QEDGVPAVVT 60 PPHGSACCAW AGGAATSSWA GPVPSTTLAT SSPRRPTVYQ PAVTRRPRRR RGAIAKAARR 120 SVVEAESHRQ NHIAVERNRR RQMNEYLAAL RALMPPSYAR RGDQASIVGG AIDFVKELEH 180 HLQSLQAQKR HHAAASHGSE GFPGFFTFPQ YSTAAAAAND VDDDSSGGEG RPTTRPGAVA 240 DVEAAVSEGH ATVKVLAPRR RRMLLRLLLG MQRRGLAALH LNASTTADQM VLYSCTLKMG 300 DGWQLSSAAD VAAAVHDIVA GIDTTEERPI YPTN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 109 | RRPRRR |
2 | 128 | 139 | RQNHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813203.1 | 0.0 | transcription factor bHLH96-like | ||||
Swissprot | Q9C7T4 | 1e-53 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A2S3HK39 | 0.0 | A0A2S3HK39_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01842.1.p | 1e-153 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10462 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-42 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D02490.1 |
Publications ? help Back to Top | |||
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