PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02401.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 352aa    MW: 38912 Da    PI: 7.298
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02401.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like110.11.1e-3447101155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprl+WtpeLHerFv+av+qLGG++kAtPkti++lm+v+gLtl+h+kSHLQkYRl
  Pahal.D02401.1  47 KPRLKWTPELHERFVDAVNQLGGPDKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.95644104IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-3345102IPR009057Homeodomain-like
SuperFamilySSF466894.66E-1846102IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2447102IPR006447Myb domain, plants
PfamPF002491.6E-1049100IPR001005SANT/Myb domain
PfamPF143793.2E-25149195IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MYHHQQQLQS HSHFLSSRQT FPPERHLLLQ GGSIPAEPGL VLSTDAKPRL KWTPELHERF  60
VDAVNQLGGP DKATPKTIMR LMGVPGLTLY HLKSHLQKYR LSKNVHTQAN GGNAKNVVGC  120
TMAMEKPPEG NGSPAGHLNL GTQTNKSVHI GEALQMQIEV QRRLHEQLEV QRHLQLRIEA  180
QGKYLQSVLE KAQETLAKQN AGSVGLETAK MQLSELVSKV STECLQHAFT GFEEMDGSQM  240
AQGHTMQLGD GSVDSCLTAC DGSQKDQDIL SISLSAHRGK EIGGMAFDIQ AKERGSEDLF  300
LDKLSRTPPS HQERRERDSF IMAAKLDLNI NDTNDGPQNC KKFDLNGFNW T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-2147103157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9437120.0EU943712.1 Zea mays clone 1680873 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796515.10.0myb-related protein 2 isoform X1
SwissprotQ9SQQ91e-105PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2T7CD660.0A0A2T7CD66_9POAL; Uncharacterized protein
STRINGSi036390m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-105G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]