PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D02400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WOX | ||||||||
Protein Properties | Length: 315aa MW: 32297.9 Da PI: 8.0374 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.7e-15 | 38 | 98 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Pahal.D02400.1 38 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 98 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.9 | 1.2e-34 | 37 | 100 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Pahal.D02400.1 37 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 100 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.57E-14 | 32 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.256 | 34 | 99 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-6 | 36 | 103 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.0E-13 | 38 | 98 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 38 | 105 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MEGSSNSPDR QSSGGSPEER GSGSGSGSGG RGTGEPVRSR WTPKPEQILI LESIFNSGMV 60 NPPKDETVRI RKLLERFGAV GDANVFYWFQ NRRSRSRRRQ RQMQAAAAAA AAAAASAAQS 120 SPVASPTVGL PSGAVRYPLA MGGSASVCQY EQQASSSSSS GSTGGSSLGL FALGPGVPGT 180 GAGYFQASCG ASSPLAPGLM GDVDSGGGSD DLFAISRQMG FAESPVASSS VAPSTTAGHQ 240 QQYYSCQSPA ATITVFINGV PMEVPRGPID LRAMFGQDVM LVHSTGALLP VNDYGILTQN 300 LQMGESYFLV ARPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728413 | 0.0 | KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796618.1 | 0.0 | WUSCHEL-related homeobox 6-like | ||||
Swissprot | A2XG77 | 1e-113 | WOX6_ORYSI; WUSCHEL-related homeobox 6 | ||||
TrEMBL | A0A2S3IR14 | 0.0 | A0A2S3IR14_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03448.1.p | 1e-159 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 5e-32 | WUSCHEL related homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D02400.1 |