PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 315aa    MW: 32297.9 Da    PI: 8.0374
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.72.7e-153898257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Pahal.D02400.1 38 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 98
                    89*****************99*************************************997 PP

2Wus_type_Homeobox106.91.2e-3437100265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
     Pahal.D02400.1  37 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 100
                        589***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-1432106IPR009057Homeodomain-like
PROSITE profilePS5007111.2563499IPR001356Homeobox domain
SMARTSM003891.2E-636103IPR001356Homeobox domain
PfamPF000465.0E-133898IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-838105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEGSSNSPDR QSSGGSPEER GSGSGSGSGG RGTGEPVRSR WTPKPEQILI LESIFNSGMV  60
NPPKDETVRI RKLLERFGAV GDANVFYWFQ NRRSRSRRRQ RQMQAAAAAA AAAAASAAQS  120
SPVASPTVGL PSGAVRYPLA MGGSASVCQY EQQASSSSSS GSTGGSSLGL FALGPGVPGT  180
GAGYFQASCG ASSPLAPGLM GDVDSGGGSD DLFAISRQMG FAESPVASSS VAPSTTAGHQ  240
QQYYSCQSPA ATITVFINGV PMEVPRGPID LRAMFGQDVM LVHSTGALLP VNDYGILTQN  300
LQMGESYFLV ARPT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284130.0KJ728413.1 Zea mays clone pUT6718 HB transcription factor (HB130) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796618.10.0WUSCHEL-related homeobox 6-like
SwissprotA2XG771e-113WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBLA0A2S3IR140.0A0A2S3IR14_9POAL; Uncharacterized protein
STRINGPavir.Ia03448.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.25e-32WUSCHEL related homeobox 12