PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02376.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 448aa    MW: 49299.7 Da    PI: 6.5939
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02376.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.7e-32230283155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r+rWtpeLHe+Fv+av+qLGGse +tPk +l+lmkv+gLt++hvkSHLQkYR+
  Pahal.D02376.2 230 KQRMRWTPELHECFVDAVNQLGGSE-TTPKGVLKLMKVDGLTIYHVKSHLQKYRT 283
                     79*******************9998.9***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.054227286IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-32228285IPR009057Homeodomain-like
SuperFamilySSF466893.4E-18229283IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-24230283IPR006447Myb domain, plants
PfamPF002494.1E-10232282IPR001005SANT/Myb domain
PfamPF143791.6E-25312359IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MRNFNLRQSE NSRIFGAMSS SLPILPNSLK ESFPRPHNPQ HIRMPRQLPN DSMPLRNGTP  60
QSATLHPRTR VIEASYSGYS ANPLDSRSNH ESQSMVAPFI SQSSSVDVFQ SLSDNTPGAH  120
TEATWFPSSM DVLPVYTDNI AAPDNQIQSG NSAMTSNEVA KQNDWWAEIM NDDWKDILDA  180
TATDSQSKAM MQPSNSTASL PAVNQSASSH SGEICPVASP PNSGNASAAK QRMRWTPELH  240
ECFVDAVNQL GGSETTPKGV LKLMKVDGLT IYHVKSHLQK YRTARYKPDL SEGTSEKRTT  300
TEELSLDLKT SMDLTEALRL QMEVQKRLHE QLEIQRKLQL RIEEQGKYLQ MMFEKQCKSS  360
TEKVQDPSSG DTSANPSSDP SHSANKDSSS AMDQNRIGDS PGTAKLGERS TQLGVKQKIT  420
EIDSDSDAAA DGGSKISKEK RRKLQDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-27229287160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-27229287160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-27229287160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-27229287160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-27229287160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-27229287160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-27229287160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-27229287160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling. Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes. Functionally redundant with PHR2 and PHR3 in regulating Pi starvation response and Pi homeostasis. {ECO:0000250|UniProtKB:Q10LZ1}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794592.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2
SwissprotB8ANX90.0PHR1_ORYSI; Protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLA0A2S3IQZ90.0A0A2S3IQZ9_9POAL; Uncharacterized protein
STRINGPavir.Ia03429.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.15e-71phosphate starvation response 1