PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D02337.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 351aa MW: 37828 Da PI: 6.5959

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02337.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.7e-10	154	199	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l Pahal.D02337.1 154 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLT 199 9****************************************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-14	150	214	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.599	152	215	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-10	154	208	No hit	No description
Pfam	PF00170	1.3E-8	154	200	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-11	154	205	No hit	No description
CDD	cd14703	2.21E-22	155	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MQQQQQPEPA DPPGRAFPPP PAPAARGAHH RRARSEVAFR LPDDLGLGGG GGPDGDGFDE 60 IGSEDDLFST FMDIEKISSS GPSDRDRDRA AETSSPPRPK HRHSSSVDGS GLFFSPGVGG 120 GTGKDAAASL AEVMEAKKAM SPEQLAELAA IDPKRAKRIL ANRQSAARSK ERKARYITEL 180 ERKVQTLQTE ATTLSAQLTL FQRDTTGLSA ENAELKIRLQ AMEQQAQLRD ALNDALKQEL 240 ERLKLATGET TNSSETYNMR FQHVPYNSSF FPLSQHNTAL HPGSAQLAPS FNPPHPNVPN 300 HQMLSHPHTL PDIMQQDSLG RLQGLDIGKG PLVVKSESSS ISASESSSTF *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MQQQQQPEPA DPPGRAFPPP PAPAARGAHH RRARSEVAFR LPDDLGLGGG GGPDGDGFDE  60
IGSEDDLFST FMDIEKISSS GPSDRDRDRA AETSSPPRPK HRHSSSVDGS GLFFSPGVGG  120
GTGKDAAASL AEVMEAKKAM SPEQLAELAA IDPKRAKRIL ANRQSAARSK ERKARYITEL  180
ERKVQTLQTE ATTLSAQLTL FQRDTTGLSA ENAELKIRLQ AMEQQAQLRD ALNDALKQEL  240
ERLKLATGET TNSSETYNMR FQHVPYNSSF FPLSQHNTAL HPGSAQLAPS FNPPHPNVPN  300
HQMLSHPHTL PDIMQQDSLG RLQGLDIGKG PLVVKSESSS ISASESSSTF *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033210	0.0	BT033210.1 Zea mays full-length cDNA clone ZM_BFb0176L19 mRNA, complete cds.
GenBank	BT063263	0.0	BT063263.1 Zea mays full-length cDNA clone ZM_BFc0045A20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795608.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-166	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2S3IQW4	0.0	A0A2S3IQW4_9POAL; Uncharacterized protein
STRING	Pavir.Ib01574.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-74	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.D02337.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]