PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02044.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 263aa    MW: 27501.7 Da    PI: 7.0955
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02044.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.77.7e-33111032103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y ++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll++
  Pahal.D02044.1  11 FVWKTYMMVEDPGTDGVIGWGRGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLRN 96 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+ s+
  Pahal.D02044.1  97 IVRRGSS 103
                     ***9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-507100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-338100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.7E-378100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-2811100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-171134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-174961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-176274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MAAGGGAAAP FVWKTYMMVE DPGTDGVIGW GRGNNSFVVA DPFVFSQTLL PAHFKHNNFS  60
SFVRQLNTYG FRKVDPDRWE FAHASFLRGQ THLLRNIVRR GSSAAGGGGG GGGGGGKRKD  120
AASVEPSAED MAMVATEVVR LKQEQRAIDD RVASMWRRVQ ETERRPKQML AFLLKVVGDR  180
DRLHRLVGDA ASPDAAGGDA AAAAEGGEKR ARLLLEGDGS FGPDAVDFAG FYSSGALGDV  240
AVDAAAGSAG GGSFAFGVDT GY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-25310512125Heat shock factor protein 1
5d5u_B1e-25110014129Heat shock factor protein 1
5d5v_B1e-25110014129Heat shock factor protein 1
5d5v_D1e-25110014129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9597411e-142EU959741.1 Zea mays clone 219739 heat shock factor protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813383.10.0heat stress transcription factor C-2b-like
SwissprotQ0DBL61e-119HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A2S3HIR20.0A0A2S3HIR2_9POAL; Uncharacterized protein
STRINGGRMZM2G118047_P011e-131(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-60heat shock transcription factor C1