PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02037.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 356aa    MW: 37443.3 Da    PI: 8.0802
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02037.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822209.87.4e-65131612148
          DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspessl 94 
                     g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  e+++ +g+sas sp+ss+
  Pahal.D02037.1  13 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPTaaERHDPIGRSASPSPCSSY 107
                     789************************************************************************9999**************** PP

          DUF822  95 qsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148
                     q        +sp++sy++sp+sssfps+ s+++i+l  +        +sl+p+l++ls++ss
  Pahal.D02037.1 108 Q--------PSPRASYNPSPASSSFPSSGSSSHITLGGNnfiggvegSSLIPWLKNLSSSSS 161
                     *........9************************9998899*****9*********998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.6E-7013157IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTSGAGGGGG GLGGTRVPTW RERENNRRRE RRRRAIAAKI FAGLRAYGNY NLPKHCDNNE  60
VLKALCNEAG WTVEPDGTTY RKGCKPTAAE RHDPIGRSAS PSPCSSYQPS PRASYNPSPA  120
SSSFPSSGSS SHITLGGNNF IGGVEGSSLI PWLKNLSSSS SIASSSKFPQ LHHLYFNGGS  180
ISAPVTPPSS SPTRTPRIKT DWENPSVQPP WAVSNYASLP NSQPPSPGHQ VAPDPAWLAG  240
FQISSAGPSS PTYSLVAPNP FGIFKETIAS TSRMCTPGQS GTCSPVMGGV PIHHDVNMVD  300
GAPDDFAFGS SSNGNNESPG LVKAWEGERI HEECASDEHE LELTLGSSKT RADPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-241690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-241690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-241690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-241690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813584.10.0protein BZR1 homolog 3
SwissprotQ5Z9E50.0BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A2S3HIR00.0A0A2S3HIR0_9POAL; Uncharacterized protein
STRINGPavir.J05652.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.13e-62BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]