PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D02015.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 432aa MW: 50452.9 Da PI: 8.4286

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02015.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.2	4.2e-11	63	109	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fYn+YAk++GFs+r+s+++ s ++e k +fvCskeg+ ++ k++ Pahal.D02015.1 63 EFYNSYAKRIGFSIRTSTTRISCLTREHHKVQFVCSKEGQGRKVKED 109 6***************************************9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-7	63	119	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
DKNHQAQQDV GSTIVAGSGT QNAHAYVVNT QEVTAVGGVE EVWLTHPVPY TGRIFCTKQE 60 TREFYNSYAK RIGFSIRTST TRISCLTREH HKVQFVCSKE GQGRKVKEDQ GTVAFEETNF 120 VEEDSEPKDT NEDHNHELVV KPSLKKFLRS HRGIPKQEGF HCIAARMQLE HSSNNTADIQ 180 LMNELYGSMQ LVPYEGKDVG NFRYTIRRTE KYQDVQETLD YFRELEQENP FFHKIKLDAE 240 HRFCESILHA LFYPFLQSTQ RSEGFNVVLK KYVNPNISVL HFVKQYQKIQ DKTDDREKKR 300 WSKYPIERHA TTVYTKNLFY RFSKEFEKTT EYDVKPEGQF QCWLVPNNIF VYGYGKRTYL 360 VTAVMTRLGV KAIPQWYILK RWTQEAVLDN KSTAPNAHVQ TNFIARVEGC KSKEAYFMDN 420 HIRVMRSEVE E*

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

DKNHQAQQDV GSTIVAGSGT QNAHAYVVNT QEVTAVGGVE EVWLTHPVPY TGRIFCTKQE  60
TREFYNSYAK RIGFSIRTST TRISCLTREH HKVQFVCSKE GQGRKVKEDQ GTVAFEETNF  120
VEEDSEPKDT NEDHNHELVV KPSLKKFLRS HRGIPKQEGF HCIAARMQLE HSSNNTADIQ  180
LMNELYGSMQ LVPYEGKDVG NFRYTIRRTE KYQDVQETLD YFRELEQENP FFHKIKLDAE  240
HRFCESILHA LFYPFLQSTQ RSEGFNVVLK KYVNPNISVL HFVKQYQKIQ DKTDDREKKR  300
WSKYPIERHA TTVYTKNLFY RFSKEFEKTT EYDVKPEGQF QCWLVPNNIF VYGYGKRTYL  360
VTAVMTRLGV KAIPQWYILK RWTQEAVLDN KSTAPNAHVQ TNFIARVEGC KSKEAYFMDN  420
HIRVMRSEVE E*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021309075.1	9e-70	protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	C5XM65	1e-109	C5XM65_SORBI; Uncharacterized protein
STRING	Pavir.J00899.1.p	1e-169	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-11	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.D02015.1