PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01839.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 434aa MW: 47056.2 Da PI: 7.0865 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.2 | 4.8e-12 | 133 | 158 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++rt tCkyG+ CkF H++ Pahal.D01839.7 133 GEKDCAFYMRTRTCKYGEACKFDHPQ 158 7889********************97 PP | |||||||
2 | zf-CCCH | 24.8 | 3.8e-08 | 182 | 208 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f+++ C++ ++CkF+H++ Pahal.D01839.7 182 PGEPDCPYFMKSNSCRFKSKCKFNHPK 208 5789*********************96 PP | |||||||
3 | zf-CCCH | 39.1 | 1.2e-12 | 236 | 261 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+f+a+tG Ck+G++CkF+H++ Pahal.D01839.7 236 FEPVCSFYAKTGKCKFGAKCKFNHPK 261 6899********************96 PP | |||||||
4 | zf-CCCH | 41.3 | 2.5e-13 | 315 | 340 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+F+H+ Pahal.D01839.7 315 PGEVDCSFYMKTGSCKYGSTCRFNHP 340 57899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 9.7E-4 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.413 | 131 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 133 | 158 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 133 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 137 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0038 | 181 | 208 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.371 | 181 | 209 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-6 | 183 | 208 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 186 | 212 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-5 | 234 | 261 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 234 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-10 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-6 | 238 | 262 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-6 | 239 | 260 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-7 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-10 | 316 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 318 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 320 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MSDPLYPYSR GAFPGGDSEP PPPPPPRYSD FEVDLIAARY AGAPPPPPYP SADASAFDSH 60 VGAFDSHFGA FDSHVGAFDS HVGAGRSAGA LYHQSFMGSH NTIGQNEALY SSNTMAKRPR 120 LESSLPLYPQ RPGEKDCAFY MRTRTCKYGE ACKFDHPQWV PEGGVPNWKE VPNVEDSYPE 180 RPGEPDCPYF MKSNSCRFKS KCKFNHPKEK VNALWAGTDN RESLIADSAI LPVRPFEPVC 240 SFYAKTGKCK FGAKCKFNHP KDVEIAPVIA KETIYTATTD AAAHIGTADS SVPAKTHAPT 300 ASAEAHNAKG LPIRPGEVDC SFYMKTGSCK YGSTCRFNHP YRPALMAPLD HDTLPTLAPI 360 VSAAVLNPAA NIMQSFDFHA THMPIEPVPI IYPQRPGETV CDDLASILRS ASFTILSTAL 420 HLVPMKTGIL SSL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815023.1 | 0.0 | zinc finger CCCH domain-containing protein 8-like isoform X3 | ||||
Swissprot | Q5ZDJ6 | 1e-159 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A2S3HTY6 | 0.0 | A0A2S3HTY6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02049.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-106 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01839.7 |
Publications ? help Back to Top | |||
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