PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01839.6
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 419aa    MW: 45217 Da    PI: 6.5499
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01839.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.6e-12133158227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C f++rt tCkyG+ CkF H++
  Pahal.D01839.6 133 GEKDCAFYMRTRTCKYGEACKFDHPQ 158
                     7889********************97 PP
2zf-CCCH39.21.2e-12221246227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+a+tG Ck+G++CkF+H++
  Pahal.D01839.6 221 FEPVCSFYAKTGKCKFGAKCKFNHPK 246
                     6899********************96 PP
3zf-CCCH41.42.4e-13300325126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+F+H+
  Pahal.D01839.6 300 PGEVDCSFYMKTGSCKYGSTCRFNHP 325
                     57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.7E-4131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5133158IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094219247IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5219246IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-10221246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6223247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-6224245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896299327IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7299326IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10301325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6303327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4305324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSDPLYPYSR GAFPGGDSEP PPPPPPRYSD FEVDLIAARY AGAPPPPPYP SADASAFDSH  60
VGAFDSHFGA FDSHVGAFDS HVGAGRSAGA LYHQSFMGSH NTIGQNEALY SSNTMAKRPR  120
LESSLPLYPQ RPGEKDCAFY MRTRTCKYGE ACKFDHPQWV PEGGVPNWKE VPNVEDSYPE  180
RPGEPDCPFN HPKEKVNALW AGTDNRESLI ADSAILPVRP FEPVCSFYAK TGKCKFGAKC  240
KFNHPKDVEI APVIAKETIY TATTDAAAHI GTADSSVPAK THAPTASAEA HNAKGLPIRP  300
GEVDCSFYMK TGSCKYGSTC RFNHPYRPAL MAPLDHDTLP TLAPIVSAAV LNPAANIMQS  360
FDFHATHMPI EPVPIIYPQR PGETVCDDLA SILRSASFTI LSTALHLVPM KTGILSSL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0183961e-138BT018396.1 Zea mays clone EL01N0320H11.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815024.10.0zinc finger CCCH domain-containing protein 8-like isoform X4
SwissprotQ5ZDJ61e-147C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A2S3HTY60.0A0A2S3HTY6_9POAL; Uncharacterized protein
STRINGPavir.Eb01915.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-94floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]