PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01839.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 413aa    MW: 45562.7 Da    PI: 7.8598
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01839.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.34.5e-123762227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ C f++rt tCkyG+ CkF H++
  Pahal.D01839.3 37 GEKDCAFYMRTRTCKYGEACKFDHPQ 62
                    7889********************97 PP
2zf-CCCH24.93.6e-0886112127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f+++  C++ ++CkF+H++
  Pahal.D01839.3  86 PGEPDCPYFMKSNSCRFKSKCKFNHPK 112
                     5789*********************96 PP
3zf-CCCH39.21.2e-12140165227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C+f+a+tG Ck+G++CkF+H++
  Pahal.D01839.3 140 FEPVCSFYAKTGKCKFGAKCKFNHPK 165
                     6899********************96 PP
4zf-CCCH41.42.4e-13219244126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG++C+F+H+
  Pahal.D01839.3 219 PGEVDCSFYMKTGSCKYGSTCRFNHP 244
                     57899********************9 PP
5zf-CCCH34.53.5e-11301325226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C+f+++tG Cky  +CkF+H+
  Pahal.D01839.3 301 GETVCDFYMKTGSCKYSQKCKFHHP 325
                     6789********************8 PP
6zf-CCCH36.77.2e-12357380427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     e+C f++r+GtC+yG  CkF H+p
  Pahal.D01839.3 357 EICAFYMRSGTCRYGVHCKFDHPP 380
                     89********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.4133563IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-43562IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-93762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53762IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-44161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.37185113IPR000571Zinc finger, CCCH-type
SMARTSM003560.003885112IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-687112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-590116IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-5138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094138166IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10140165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6143164IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7218245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896218246IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10220244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6222246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4224243IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7297327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.845299327IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5299326IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-9301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5304325IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6355381IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9357380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5357378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGSHNTIGQN EALYSSNTMA KRPRLESSLP LYPQRPGEKD CAFYMRTRTC KYGEACKFDH  60
PQWVPEGGVP NWKEVPNVED SYPERPGEPD CPYFMKSNSC RFKSKCKFNH PKEKVNALWA  120
GTDNRESLIA DSAILPVRPF EPVCSFYAKT GKCKFGAKCK FNHPKDVEIA PVIAKETIYT  180
ATTDAAAHIG TADSSVPAKT HAPTASAEAH NAKGLPIRPG EVDCSFYMKT GSCKYGSTCR  240
FNHPYRPALM APLDHDTLPT LAPIVSAAVL NPAANIMQSF DFHATHMPIE PVPIIYPQRP  300
GETVCDFYMK TGSCKYSQKC KFHHPINRSA PGANENGDPQ QPVTLTLAGL PRREDAEICA  360
FYMRSGTCRY GVHCKFDHPP PQEAIAKLQA TGKEGENENE GEEKEGLSVV LR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815023.10.0zinc finger CCCH domain-containing protein 8-like isoform X3
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A2S3HTX70.0A0A2S3HTX7_9POAL; Uncharacterized protein
STRINGPavir.Eb01915.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-140floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]