PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01786.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 437aa    MW: 47259.5 Da    PI: 6.891
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01786.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25.1e-141259249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie+ + r  tf kRr g++K A+ LS+L++++vav++ s++ ++  +
  Pahal.D01786.1 12 FIEDGRGRGLTFFKRRSGLFKAASDLSTLTGVRVAVVLESENERFSSF 59
                    899***************************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-10262IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.474363IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-5525IPR002100Transcription factor, MADS-box
CDDcd002662.23E-14671No hitNo description
SuperFamilySSF554551.12E-141073IPR002100Transcription factor, MADS-box
PfamPF003194.2E-161259IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-52540IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-54061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPKRGRRSGV SFIEDGRGRG LTFFKRRSGL FKAASDLSTL TGVRVAVVLE SENERFSSFG  60
TPDASPIVDA FLSGGVPTES DTSEEQKAKV TDLQNELFQL EKDKAMADKR QKENMVRIKE  120
AQEASRTAKY AYGKEEDLDV TELYEMYRKL TWVMQEIKDC SPALLRDNHV EAGGRLRDPS  180
LLQPKWWCSS LASQFSPPPK YSPLSLSQAS FQQHPWPSTS HPMLARSGSS LPNPLMLPSQ  240
QMQSELQQHP LAPHAPSIVV RLQAPLPKEA YPYNYHIHGL DINGNSSHPF SLSPVSPSTP  300
PQPSSLQTPA SNGSSPPLLS PQLSSPPHLE SQQFSFNPQN YNFVQPPHHN YADASSPLTP  360
SHQPFYNSSL GLKVDLGNTG GNGGQTGGGH SKGFDSSTTL QGHGGTGVAL ESSPAGESSG  420
AGNAGSNLGD FNFPCY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815415.10.0transcription factor RLM1-like
TrEMBLA0A2S3HU130.0A0A2S3HU13_9POAL; Uncharacterized protein
STRINGPavir.Eb02038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-12AGAMOUS-like 62