PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D01505.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 126aa MW: 14841.7 Da PI: 10.4696

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D01505.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39	2.7e-12	44	112	1	79
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevt 79 +fYn Y+ evGF ++k++ ++ ++g t+r++ C ++g++e++k k +++tgCka++++ +++++ w++ Pahal.D01505.1 44 EFYNMYSWEVGFGIKKATRVTN-KKGFHTMRDMSCLCSGSEERSKYK---------TKKTGCKAMIQLLRSNNDGWYIP 112 6*************998887.77779*******99988776.........99****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-9	44	113	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MPCVLVWMSM KSLLGFFLLI KQWSKRKHNK LIIMQKLTKN EGYEFYNMYS WEVGFGIKKA 60 TRVTNKKGFH TMRDMSCLCS GSEERSKYKT KKTGCKAMIQ LLRSNNDGWY IPRSCTQLLR 120 LLLYY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T7D5Z4	2e-72	A0A2T7D5Z4_9POAL; Uncharacterized protein
STRING	Pavir.J11137.1.p	3e-20	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	2e-07	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Pahal.D01505.1