PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 116aa MW: 12608.6 Da PI: 9.8279 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 48.3 | 2.2e-15 | 22 | 50 | 27 | 55 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk+ lelm+vk+Ltl+hvkSHLQ+YR+ Pahal.D01490.1 22 ATPKSALELMNVKDLTLAHVKSHLQMYRT 50 9***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.85E-6 | 21 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-13 | 22 | 50 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-11 | 22 | 50 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MHVHILGSET SLLCFLLHLL GATPKSALEL MNVKDLTLAH VKSHLQMYRT VKGTDRSCVA 60 GLGQQARGMA FLRRGAGEVD GFDVFNSSRS VNTTTTFNNY TNTARLAHCI SFLPK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY661659 | 1e-49 | AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805465.1 | 2e-40 | uncharacterized protein LOC112884302 | ||||
TrEMBL | A0A2T7EIQ0 | 3e-49 | A0A2T7EIQ0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J18135.1.p | 2e-49 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 4e-16 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01490.1 |