PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01318.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 373aa    MW: 40613.2 Da    PI: 7.2874
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01318.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.26.6e-11949141
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    k ien  +r  t+ +R  g+ KK + L +LC++e+++i f 
  Pahal.D01318.1  9 KLIENPKKRRATYKNRCDGLVKKTSQLATLCGVEALLICFD 49
                    569***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.62E-15153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.264148IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-7160IPR002100Transcription factor, MADS-box
CDDcd001202.31E-15351No hitNo description
PfamPF003191.7E-131151IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPRGKLGMKL IENPKKRRAT YKNRCDGLVK KTSQLATLCG VEALLICFDP KPAGSRRRRR  60
IRDREDVLEL IKKYRETPAD KVRHSFTAAA YYQEELAKQQ RKLLKIEQCG PDKLNLQDWR  120
LADLPPTLRK AQQRIVALGG HVEDDGDVPS ATTAMVAAPT PLADYNSFDL AFSVPDAGSI  180
LTLYYYPPFD MLPQPEPLQP PCLAYHQMLL PGYTFQMLPP APLIAPLDLG MAGTGTVDFP  240
PFATNFSHGG ATGPGFYDDF MSGFDATGGG VVYVDDYVAG GGQSFAAGHA GARYQHEHHL  300
PAGVWPVSRL NNNPGPMDAA APPERNDFAV LPGSSTSSSS SSTCFQGGFQ KKLLHDGYVF  360
HPDVTVDLIS FV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2S3HK590.0A0A2S3HK59_9POAL; Uncharacterized protein
STRINGSi039273m1e-154(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143511825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-11MIKC_MADS family protein