PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D01267.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 411aa    MW: 43552.3 Da    PI: 5.8845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D01267.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05125146223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +Cp Cgk F++  ++  H+r+H
  Pahal.D01267.1 125 ECPECGKFFKSDKSMFGHLRSH 146
                     6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.012124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388124151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-8125146No hitNo description
PfamPF139125.9E-5125147IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-8267294No hitNo description
SMARTSM003551.2272295IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452272299IPR007087Zinc finger, C2H2
PfamPF139125.5E-8272297IPR007087Zinc finger, C2H2
PROSITE patternPS000280274295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSKGSLLCSL VLLQVCIAQL SLVSGSLLTG GQIGGNLLCQ DPIRRAWLMS SHGRDEFEGH  60
NADFIFDEEL ADEGVDTSDD RGVLVAVGEA GAEEEEGLLP SDGDDEGGDN SGGTKDSSGS  120
GGDVECPECG KFFKSDKSMF GHLRSHPNKG YKGTTPPVKK LKLSPETAAT AATSSSSSSQ  180
DNKQATQVLP PPPSFGKLDA IGQAEGGIRG SATGYAAAKI KGNNDGNVGN YDEHSGSFVK  240
IPKKRRNMPK EVSEAHRKKA KFVPTLKEKR PYICKHCKAE FSMHQALGGH MAGHHKEKVV  300
PALDDSSLRA HQSMAAESQN AKEQVGGGDE DDNSWHGNDL SPPRGQFSIV LDVPWQCGQA  360
SGGQMRQHSK RNDGLSSPPV VPVATPTPTD DGDGRRLFDI DLNVKVPEQE *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.10.0uncharacterized protein LOC112890871
TrEMBLA0A2S3HJM70.0A0A2S3HJM7_9POAL; Uncharacterized protein
STRINGPavir.Da01512.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-06C2H2-like zinc finger protein