PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GATA | ||||||||
Protein Properties | Length: 365aa MW: 38713.1 Da PI: 8.9269 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.6 | 1.4e-17 | 182 | 215 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Pahal.D01034.1 182 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 215 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.09E-12 | 174 | 216 | No hit | No description |
SMART | SM00401 | 2.1E-16 | 176 | 227 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.8E-14 | 180 | 215 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.268 | 180 | 212 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 7.99E-16 | 181 | 230 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 182 | 207 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.7E-15 | 182 | 215 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSAIYMSQLS TALPLMEGDH HQDHHHHHHQ GHFQTFTLPK DPPILFPFVI SSSSSASDSS 60 LSYGSADHHL MFRQQHQAML EPQHMIGGSS SASVFATPFP TVESIRDDMI EPSSYDPYDM 120 GRLQAAGSLE AAGSWTPPAK MRITRKATAD PGAAKKPRRK AQGYEDMMSM GGQPNLGVIR 180 VCSDCNTTKT PLWRSGPCGP KSLCNACGIR QRKARRAMMA SGGGSGPVPA DGAKAATATP 240 RDAMAAPAHP KVKKEKRVDV DRSLPFKKRC KLVQDHAGAA GPPPAAAHKA VVQPAAEVAD 300 DAGLSSRDLV DNIGLLSWSR NPAPPSAAAS CSLFRASPGL PVQQDEITDA AMLLMTLSCG 360 LVRS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812836.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A2S3HIY4 | 0.0 | A0A2S3HIY4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01250.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 2e-21 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01034.1 |