PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00930.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 501aa    MW: 55423.5 Da    PI: 4.4131
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.92.7e-1956103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+d+v+ +G g+W+ + r  g++R++k+c++rw ++l
   Pahal.D00930.1  56 KGPWTPEEDKRLKDYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 103
                      79******************************************9986 PP
2Myb_DNA-binding44.34.2e-14109152146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++ +eE e++++ + ++G++ W++ a++++ gRt++++k++w++
   Pahal.D00930.1 109 KGPFDAEEVEKIIKFHIMWGNK-WAKMASHLP-GRTDNEIKNYWNT 152
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.02251107IPR017930Myb domain
SuperFamilySSF466895.62E-3053150IPR009057Homeodomain-like
SMARTSM007172.6E-1655105IPR001005SANT/Myb domain
PfamPF002493.8E-1756103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2457110IPR009057Homeodomain-like
CDDcd001672.33E-1258103No hitNo description
PROSITE profilePS5129418.451108158IPR017930Myb domain
SMARTSM007174.1E-15108156IPR001005SANT/Myb domain
PfamPF002491.2E-12109152IPR001005SANT/Myb domain
CDDcd001671.16E-10111154No hitNo description
Gene3DG3DSA:1.10.10.603.1E-23111156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MTVMKVEQDP ALELAPEAGA EELSPPLSSC DEEDDDEDEE TDSEGNGGGG EPPLKKGPWT  60
PEEDKRLKDY VEAHGEGNWN QVQRNAGLNR CGKSCRLRWA NHLRPDLKKG PFDAEEVEKI  120
IKFHIMWGNK WAKMASHLPG RTDNEIKNYW NTRLKRHQRA GLPIYPEYLL SRVPDQDMNC  180
HTPDESRGKK RSNELPQEKV VGMDDLVGDF MVFQHLDYGK DPVVPTNPLK RHASTGDLSS  240
VQITVNTEKT FYSNDLNYVL TKSQSMPLGC AIASGYPIFD GNLSTSGTIH GSMKTELPSF  300
QCSKDDLSNG WLLQCPWASI EQQIDTFIQS PESMSSHNTG LLGTIINKGD VLDDPTKFER  360
IFEMAVPLGY NIVSQSDDYP TRHPSSSVNG DCEPDTCLFT EIQDSNSPSG GSDAIFTLGK  420
CYPDANFSVA GMPGTSLEAS FLNDDSLLSK DHSYLYPSGS LFDEESCEEP KPLIYAGQWF  480
DSTAWKSVPG ACNMPDFPGP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-275215623126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794391e-117HF679439.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB33 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812565.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A2S3HI520.0A0A2S3HI52_9POAL; Uncharacterized protein
STRINGPavir.Da00534.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129022331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.15e-60myb domain protein 33