PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00896.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 422aa    MW: 44401.2 Da    PI: 8.1657
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00896.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.28.5e-91424212374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++l+l+ A+ ++ gdl +a+++   l   asp++d+  Rla +f++ALa r        +  ++p   s      +  a+ +f+++ P+l+f+hl
  Pahal.D00896.1  42 RDLVLASADLLQRGDLPAARRAAGVLLSAASPRADAADRLAYHFARALALRADA--RAAAGRVAPGLVSAAARPASSGAYLAFNQIAPFLRFAHL 134
                     6789999********************************************998..55555566666666667888899999************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl....... 181
                     taNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+a+R+   +gpp++RiTg g+    ++e+l +tg+rL+ fA+++++pf+f++l       
  Pahal.D00896.1 135 TANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRETLLRTGSRLRAFARSIQLPFHFTPLllscaat 225
                     ***************************************988888***********....9***************************9998877 PP

            GRAS 182 ......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysa 266
                            ++++++    +L+++p+E+laVn+++ lh+l    +  ++e  ++Lk vk + P vv+++e+e+  ++     ++ +r + a+++ysa
  Pahal.D00896.1 226 hqqvasGSTTTASSGATSLELHPDETLAVNCIMFLHKLG---G--QDEVAAFLKWVKAMAPAVVTIAERETIGGGYdridDLPQRAAVAMDHYSA 315
                     666332222344446789********************8...2..233578*******************55533334449************** PP

            GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                     +f++lea++p+ s+er  vE+e+lgrei+  +  +g +     + le+W ++ ++aGF + pls +a++qa+lllr ++ s+gy v+e +g+ +l
  Pahal.D00896.1 316 VFEALEATVPPGSRERLAVEQEVLGREIEASLGPAGGR---WWRGLERWGAAARAAGFAARPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFL 407
                     *********************************99987...7899************************************************** PP

            GRAS 361 gWkdrpLvsvSaWr 374
                     gW++rpL+svS+W+
  Pahal.D00896.1 408 GWQTRPLLSVSSWQ 421
                     *************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.53115400IPR005202Transcription factor GRAS
PfamPF035142.9E-8842421IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLGSLHHHHS SSSSDTDNNN DTKNGSNSSG GVLAAAAAPS ARDLVLASAD LLQRGDLPAA  60
RRAAGVLLSA ASPRADAADR LAYHFARALA LRADARAAAG RVAPGLVSAA ARPASSGAYL  120
AFNQIAPFLR FAHLTANQAI LDAVEGARRI HILDLDAAHG VQWPPLLQAI AERADPAAGP  180
PEVRITGAGA DRETLLRTGS RLRAFARSIQ LPFHFTPLLL SCAATHQQVA SGSTTTASSG  240
ATSLELHPDE TLAVNCIMFL HKLGGQDEVA AFLKWVKAMA PAVVTIAERE TIGGGYDRID  300
DLPQRAAVAM DHYSAVFEAL EATVPPGSRE RLAVEQEVLG REIEASLGPA GGRWWRGLER  360
WGAAARAAGF AARPLSAFAV SQARLLLRLH YPSEGYLVQE ARGACFLGWQ TRPLLSVSSW  420
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-506942131375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8765580.0KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.10.0protein MONOCULM 1-like
RefseqXP_025810769.10.0protein MONOCULM 1-like
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A2T7DWM20.0A0A2T7DWM2_9POAL; Uncharacterized protein
TrEMBLA0A2T8JCB90.0A0A2T8JCB9_9POAL; Uncharacterized protein
STRINGSi008068m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-72GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]