PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00878.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 400aa    MW: 42896.3 Da    PI: 7.8286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00878.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05188207120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  Pahal.D00878.1 188 FSCPVCYKTFNRYNNMQMHM 207
                     89*****************9 PP
2zf-C2H214.10.00014272294123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  Pahal.D00878.1 272 FMCRKCGKAFAVRGDWRTHEKNC 294
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.96E-5184210No hitNo description
Gene3DG3DSA:3.30.160.607.1E-6188207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-6256292No hitNo description
Gene3DG3DSA:3.30.160.601.7E-6258292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808272292IPR007087Zinc finger, C2H2
SMARTSM0035549272292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGDPYTNFLR GYYSHFPPSN PPSFPTSSYA SSYLHPPPPS PPIREALPLL SSLTPSSSAT  60
NHHQHHDDVA RDHKGCRRAT SCSGQDAADQ AAAGEVTVAL HIGLPSPSPS ESAAGGGDSR  120
EQAAEGSSSL QQQQGDGGHE GGGDEEDGDD GEDAAMAVGC ASIGIGRLTK GQYWIPTPSQ  180
ILIGPTQFSC PVCYKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML RLPCYCCAAG  240
CRNNIDHPRA RPLKDFRTLQ THYRRKHGIK PFMCRKCGKA FAVRGDWRTH EKNCGKLWYC  300
ACGSDFKHKR SLKDHIRAFG RGHAACGIDC FDDLDDDDRD PSSEVDHAAG GSTATATASA  360
TTTNTTSAAT AAGAASSHRH HHWKPPPPSS RGSGSDRLL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389150.0BT038915.1 Zea mays full-length cDNA clone ZM_BFb0339K06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810593.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-128ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2S3HI070.0A0A2S3HI07_9POAL; Uncharacterized protein
STRINGPavir.Db00765.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]