PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.D00864.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 683aa MW: 73807.6 Da PI: 5.6751 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.5 | 1.1e-26 | 193 | 246 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++r++W eLH++Fveav+q+ G+++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+ Pahal.D00864.3 193 RQRVQWPGELHRKFVEAVNQI-GIDRAVPKKILEVMNVDSLTRENVASHLQKYRI 246 58*******************.********************************6 PP | |||||||
2 | Response_reg | 76.5 | 9.8e-26 | 12 | 121 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl vdD+++ +++l++ l++ +y +v++++d++ al++l+e++ ++l++ D+ mp++dG++ll+ i e ++p+i+++a++e e++ + ++ Pahal.D00864.3 12 VLAVDDDRVSLMILEKQLKHCNY-NVTTVTDAKTALDMLRERKdvdqFELVISDVVMPDIDGFKLLELIGLEM-DIPVIMLSANDETETVMKGIN 104 799********************.***************99988999**********************6644.8******************** PP TTESEEEESS--HHHHH CS Response_reg 92 aGakdflsKpfdpeelv 108 Ga d+l+Kp+ e+l+ Pahal.D00864.3 105 HGACDYLVKPVRLEQLR 121 **************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 4.27E-34 | 9 | 131 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-39 | 9 | 159 | No hit | No description |
SMART | SM00448 | 1.1E-29 | 10 | 124 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.895 | 11 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.6E-23 | 12 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.46E-28 | 13 | 121 | No hit | No description |
PROSITE profile | PS51294 | 11.484 | 190 | 249 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.14E-19 | 190 | 250 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-27 | 191 | 250 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 194 | 246 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 683 aa Download sequence Send to blast |
MDAGKFPAGM RVLAVDDDRV SLMILEKQLK HCNYNVTTVT DAKTALDMLR ERKDVDQFEL 60 VISDVVMPDI DGFKLLELIG LEMDIPVIML SANDETETVM KGINHGACDY LVKPVRLEQL 120 RGIWTHVVRN SKSDPRNSIS DGNDDADQKL QSGDGDKGEK DGGNHTRKYS KKKKKDIDGA 180 DEDKENASST QKRQRVQWPG ELHRKFVEAV NQIGIDRAVP KKILEVMNVD SLTRENVASH 240 LQKYRIFLRK LSEGKVKKSS PFADGPKAWR SDWVPAYSTT NIAESSKHHR ELGKYQSAPS 300 FVASPSSSNP FARMNSPPAF GARTFLPTQS VQLVSSQRNA CIPPQDKEPV GQGVNLSGAS 360 QCFPSGPGSS FANIPNGVVF NTSKPLYLGI SGSSFANITS DSPPLASSKC CPSPRSCNSY 420 ASILCGKILG ASRGIPFEDI ADDEILAPSI HLPMQSPELV NQPPDQIQSS FAGLFNQVAR 480 EAHQFAGPCN SWKAAVPSRF PDLSHNVGMS KGPSQGNIVK INQLSRLAAS SGQIPILGNL 540 YQNQLAGIIG KTAPALSFSE QVEPFNFGSN THYTTMSIGN PDLGSSSSTR PSLPNLQIDN 600 SVIPTQILNG EDASGNLPEG GTNNQQAVGD QVINSNEFLV GTNEVQNGAN GGLNDFFADM 660 VDEQDFVNNG DAFLGGDWDF AP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-23 | 189 | 252 | 1 | 64 | ARR10-B |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812920.1 | 0.0 | two-component response regulator ORR25-like isoform X1 | ||||
TrEMBL | A0A2S3HHY2 | 0.0 | A0A2S3HHY2_9POAL; Two-component response regulator | ||||
STRING | Pavir.Db00757.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 3e-80 | response regulator 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.D00864.3 |