PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00864.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 682aa    MW: 73679.5 Da    PI: 5.6751
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00864.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.51.1e-26193246155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     ++r++W  eLH++Fveav+q+ G+++A+Pk+ile+m+v++Lt+e+v+SHLQkYR+
  Pahal.D00864.2 193 RQRVQWPGELHRKFVEAVNQI-GIDRAVPKKILEVMNVDSLTRENVASHLQKYRI 246
                     58*******************.********************************6 PP
2Response_reg76.59.8e-26121211108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                     vl vdD+++ +++l++ l++ +y +v++++d++ al++l+e++    ++l++ D+ mp++dG++ll+ i  e  ++p+i+++a++e e++ + ++
  Pahal.D00864.2  12 VLAVDDDRVSLMILEKQLKHCNY-NVTTVTDAKTALDMLRERKdvdqFELVISDVVMPDIDGFKLLELIGLEM-DIPVIMLSANDETETVMKGIN 104
                     799********************.***************99988999**********************6644.8******************** PP

                     TTESEEEESS--HHHHH CS
    Response_reg  92 aGakdflsKpfdpeelv 108
                      Ga d+l+Kp+  e+l+
  Pahal.D00864.2 105 HGACDYLVKPVRLEQLR 121
                     **************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.27E-349131IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.7E-399159No hitNo description
SMARTSM004481.1E-2910124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.89511128IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.5E-2312121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.45E-2813121No hitNo description
PROSITE profilePS5129411.484190249IPR017930Myb domain
SuperFamilySSF466899.14E-19190250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-27191250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23194246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MDAGKFPAGM RVLAVDDDRV SLMILEKQLK HCNYNVTTVT DAKTALDMLR ERKDVDQFEL  60
VISDVVMPDI DGFKLLELIG LEMDIPVIML SANDETETVM KGINHGACDY LVKPVRLEQL  120
RGIWTHVVRN SKSDPRNSIS DGNDDADQKL QSGDGDKGEK DGGNHTRKYS KKKKKDIDGA  180
DEDKENASST QKRQRVQWPG ELHRKFVEAV NQIGIDRAVP KKILEVMNVD SLTRENVASH  240
LQKYRIFLRK LSEGKVKKSS PFADGPKAWR SDWVPAYSTT NIAESSKHHR ELGKYQSAPS  300
FVASPSSSNP FARMNSPPAF GARTFLPTQS VQLVSSQRNA CIPPQDKEPV GQGVNLSGAS  360
QCFPSGPGSS FANIPNGVVF NTSKPLYLGI SGSSFANITS DSPPLASSKC CPSPRSCNSY  420
ASILCGKILG ASRGIPFEDI ADDEILAPSI HLPMQSPELV NQPPDQIQSS FAGLFNQVAR  480
EAHQFAGPCN SWKAAVPSRF PDLSHNVGMS KGPSQGNIVK INQLSRLAAS SGQIPILGNL  540
YQNQLAGIIG KTAPALSFSE QVEPFNFGSN THYTTMSIGN PDLGSSSSTR PSLPNLQIDN  600
SVIPTQILNG EDASGNLPEG GTNNQQAVGD QVINSNEFLV GTNEVQNGAN GGLNDFFADM  660
VDEDFVNNGD AFLGGDWDFA P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-23189252164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812922.10.0two-component response regulator ORR24-like isoform X2
TrEMBLA0A2S3HHY30.0A0A2S3HHY3_9POAL; Two-component response regulator
STRINGPavir.Db00757.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-80response regulator 12