PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00855.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 233aa    MW: 24109.6 Da    PI: 9.6716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00855.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.3e-073256226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    kt+ C+ +     Ck G++C+FaHg
  Pahal.D00855.2 32 KTRMCNKYNTAEGCKWGSKCHFAHG 56
                    89**********************9 PP
2zf-CCCH375.5e-12198223127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC +f + G C +GdrC+FaHg+
  Pahal.D00855.2 198 FKTKLCENFNK-GSCTFGDRCHFAHGE 223
                     69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-142662IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4363058IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-83061IPR000571Zinc finger, CCCH-type
SMARTSM003561.53057IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.34E-1499171IPR004088K Homology domain, type 1
SMARTSM003223.8E-10101171IPR004087K Homology domain
PROSITE profilePS5008414.802102166IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-15102170IPR004088K Homology domain, type 1
CDDcd001051.30E-13104166No hitNo description
PfamPF000132.6E-11104167IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.5E-17195229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9197228IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7197223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131197224IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9198223IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTNLGGPPVP APPGRMPMGP GAPDGPPSPA VKTRMCNKYN TAEGCKWGSK CHFAHGDREL  60
GKPMQMENSM GAPPMGPGPN GHFMPPPMPV PDMVPPSTFG ASATAKISVD ASLAGAIIGK  120
GGTNTKHISR VTGAKLAIRD NEADPNLKNI ELEGTFDQIK HASAMVTELI VRISGKAPPQ  180
AKNNPGRGSH AGGPGSNFKT KLCENFNKGS CTFGDRCHFA HGESELRKPA AA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810913.11e-168zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-135C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2S3HHX01e-167A0A2S3HHX0_9POAL; Uncharacterized protein
TrEMBLA0A2T7DWH71e-167A0A2T7DWH7_9POAL; Uncharacterized protein
TrEMBLA0A3L6PHF41e-163A0A3L6PHF4_PANMI; Uncharacterized protein
STRINGPavir.J02805.1.p1e-143(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-55C3H family protein