PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00843.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 294aa MW: 32089.7 Da PI: 5.5974

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00843.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39	1.7e-12	134	184	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 k+ rr ++NR +A +sR+RKk +i+ Le+k+k Leae ++L l+ + e Pahal.D00843.1 134 KKKRRQMRNRDSAMKSRERKKTYIKDLETKSKYLEAECRRLSYALQCYAAE 184 999***********************************9999877766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-5	130	194	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.841	132	195	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-11	134	192	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.7E-13	134	193	No hit	No description
Pfam	PF00170	2.2E-10	134	190	IPR004827	Basic-leucine zipper domain
CDD	cd14704	3.39E-14	135	186	No hit	No description
PROSITE pattern	PS00036	0	137	152	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDDIDLDALL ASFSGEPAGV SDLIVPSPPP PALAPARDAE AGSPQSVTSR ARPPGEEALT 60 EIEKFLMQEG EAELSGEAEG ISVEEFFDAL YDGGERGGRG RRARRVEARM RIPEGMRTPE 120 AETVEVDGDD PVNKKKRRQM RNRDSAMKSR ERKKTYIKDL ETKSKYLEAE CRRLSYALQC 180 YAAENMVLRQ SLLKDRPIGA PIAMQESAVL TETLPLVSLL WLVSIVCLFL MPGLPNRSPA 240 APSSAGRGLG MVAGKTSSEN PEILELILHG RRCKSTRAKI KLDTLPFHAE AVC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	137	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811329.1	1e-179	LOW QUALITY PROTEIN: bZIP transcription factor 50-like
Swissprot	Q69XV0	6e-99	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A2T8JC73	0.0	A0A2T8JC73_9POAL; Uncharacterized protein
STRING	Si006978m	1e-163	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	2e-14	basic region/leucine zipper motif 60

Link Out ? help Back to Top
Phytozome	Pahal.D00843.1

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]