PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00773.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 431aa    MW: 46462.9 Da    PI: 8.6322
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00773.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-18104153155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  Pahal.D00773.1 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDQAAIKFRG 153
                     78*******************......55************************997 PP
2AP241.82.7e-13196246155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+++k  g+W+A+I         +k+++lg ++t+ eAa+a+++a+ k +g
  Pahal.D00773.1 196 SRFRGVTQHK-CGKWEARIGQlM----GKKYVYLGLYDTEMEAAQAYDKAAIKCYG 246
                     789*******.7******77733....25**********77**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-10104153IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-16104162IPR016177DNA-binding domain
PROSITE profilePS5103217.754105161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17105161IPR001471AP2/ERF domain
SMARTSM003801.9E-31105167IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-17196254IPR016177DNA-binding domain
PfamPF008474.8E-9196246IPR001471AP2/ERF domain
CDDcd000182.72E-24196256No hitNo description
PROSITE profilePS5103215.843197254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-17197254IPR001471AP2/ERF domain
SMARTSM003801.1E-34197260IPR001471AP2/ERF domain
PRINTSPR003673.8E-6198209IPR001471AP2/ERF domain
PRINTSPR003673.8E-6236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAATKRSFHG AVDGIARAVA EDELQADRRP EEGTRMIFGL PVPGVPTRTA AAVTQQFFPA  60
TVAPAAPAPA PAPEQCHVAA ASAADQWARS ASRKSRRGPR SRSSQYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAQAA ARAYDQAAIK FRGVNADINF TLSDYTDEIK KMKNFSKEEF  180
VQVLRRQGAG FVRGSSRFRG VTQHKCGKWE ARIGQLMGKK YVYLGLYDTE MEAAQAYDKA  240
AIKCYGKEAV TNFEPQTYDE ELQVQSWGGE LDLELSLGCA GGDPSSTVAV DAFNTAPSRQ  300
RTMTLTLALP EEDEETGAGY PHGSIRTIPS PTPCTFRLLP LADDHAHHPR TGGRDDTGHM  360
LQMGQVGSSG GAAAAHMRWP NGGNNWAPPY ATARADADAD AAAAASSGFP LGQLGHRCRQ  420
QPPAASRPGR *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403460.0BT040346.1 Zea mays full-length cDNA clone ZM_BFc0084O08 mRNA, complete cds.
GenBankKJ7269410.0KJ726941.1 Zea mays clone pUT3487 AP2-EREBP transcription factor (EREB55) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810716.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8B0I81e-150AP24_ORYSI; APETALA2-like protein 4
TrEMBLA0A2S3HHQ00.0A0A2S3HHQ0_9POAL; Uncharacterized protein
STRINGPavir.J27340.1.p0.0(Panicum virgatum)
STRINGSi006371m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-86AP2 family protein