PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00574.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 222aa MW: 24848.1 Da PI: 4.7115

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00574.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	176.1	3.4e-55	70	174	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw ++ ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+dfl Pahal.D00574.1 70 QLQQFWDERvadIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFL 164 89**9988889****************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k Pahal.D00574.1 165 VDIVPRDEMK 174 *****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.68E-33	40	164	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-37	84	156	IPR009072	Histone-fold
Pfam	PF00808	4.6E-21	92	155	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEPPSQTQPA IGVAAYPPAA TIATPAIEAA GLQPGQAFAA NPAQMSAQHQ IVYQQAQQFH 60 QQLQQQQQRQ LQQFWDERVA DIEQTTDFKN HTLPLARIKK IMKADEDVRM ISAEAPVVFA 120 KACEIFILEL TLRSWMHTEE NKRRTLQKND IAAAITRTDI YDFLVDIVPR DEMKEEGVGL 180 PRAGLPPMGA PADAHPYYLW QEPQEQQEPP PEEQQSLRGS G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-57	81	170	6	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813612.1	1e-161	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	1e-107	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A2S3HHI0	1e-160	A0A2S3HHI0_9POAL; Uncharacterized protein
STRING	Pavir.Db00412.1.p	1e-117	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-67	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Pahal.D00574.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]