PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00573.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 25845.2 Da    PI: 4.8402
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00573.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+EL vLCd++v v++fs++gkl+ey++
  Pahal.D00573.1  9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDVDVGVVVFSERGKLFEYPN 59
                    79***********************************************95 PP
2K-box51.93.3e-1884160984
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                      ++ +++++  e+ +L++e+e+Lq ++    GedL+sL s+ eL +LeqqLe++l+k R++K+ell++  +elq k 
  Pahal.D00573.1  84 HCTDHQQQMIAEIGRLRREYEQLQASLMACTGEDLSSLtSVDELDELEQQLESALSKARARKDELLTSLDDELQLKI 160
                     6778899*******************************5689**************************999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.557161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-37160IPR002100Transcription factor, MADS-box
CDDcd002655.71E-38272No hitNo description
SuperFamilySSF554554.19E-30284IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1586158IPR002487Transcription factor, K-box
PROSITE profilePS5129712.24189177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKVEMKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD VDVGVVVFSE RGKLFEYPNP  60
PASLTDLIRR YEAVTNTQLL QETHCTDHQQ QMIAEIGRLR REYEQLQASL MACTGEDLSS  120
LTSVDELDEL EQQLESALSK ARARKDELLT SLDDELQLKI NGNGRHGAAA VGVETEEIAE  180
PLPPSPSFAY LLKVKEKSAA STMLQLWPQA DDDDDDVGSG GGGGSGPPRG LQLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-17189194MEF2 CHIMERA
6byy_B7e-17189194MEF2 CHIMERA
6byy_C7e-17189194MEF2 CHIMERA
6byy_D7e-17189194MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5524823e-45FN552482.1 Pennisetum glaucum AFLP fragment RQVTKKA2-4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811394.11e-158MADS-box transcription factor 30-like
SwissprotQ655V44e-56MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A2S3HH791e-171A0A2S3HH79_9POAL; Uncharacterized protein
STRINGPavir.J10823.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.41e-27MIKC_MADS family protein