PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D00518.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 37139.4 Da PI: 8.6457 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l Pahal.D00518.2 19 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 66 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 48.2 | 2.4e-15 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++ + G++ W++I+++++ gRt++++k++w++ Pahal.D00518.2 72 KGPFSPEEERQILRLHGLIGNK-WARISSHLP-GRTDNEIKNYWNT 115 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.212 | 16 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-30 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.10E-12 | 21 | 66 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 34 | 43 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.6 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-16 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 72 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-11 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-25 | 74 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MARSGGGVEG GGSCGGLKKG PWTQAEDKLL VDHVRRHGEG NWNAVRRETG LQRCGKSCRL 60 RWANHLRPNL RKGPFSPEEE RQILRLHGLI GNKWARISSH LPGRTDNEIK NYWNTRLKRR 120 QRAGLPLYPP DVEREIALLR AQNVNPFADS DGNANASGSL PPPLLYDASN PFALPPTVPS 180 PSGSASPLIN QNYPLLNQMQ GMQQVFHHLA SQQSPQPVFH PHHQDSSGAA ALGHGGFVSA 240 GLPPLPTRPQ AAELPSNQFD SSSSGSGGGL LESLLLGDDH LPRHNHPSMV KVSSMPALSY 300 SYREPVSSRL PVHGAGSDSD DTSHCLPGED MHHGATWNFT FD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 17 | 120 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038723 | 1e-165 | BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813892.1 | 0.0 | transcription factor MYB97-like | ||||
TrEMBL | A0A2S3HH14 | 0.0 | A0A2S3HH14_9POAL; Uncharacterized protein | ||||
STRING | Si006555m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 4e-60 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D00518.2 |