PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00518.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 343aa    MW: 37139.4 Da    PI: 8.6457
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00518.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l
   Pahal.D00518.2 19 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 66
                     79******************************************9986 PP

2Myb_DNA-binding48.22.4e-1572115146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ ++++++ + G++ W++I+++++ gRt++++k++w++
   Pahal.D00518.2  72 KGPFSPEEERQILRLHGLIGNK-WARISSHLP-GRTDNEIKNYWNT 115
                      79********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2121666IPR017930Myb domain
SuperFamilySSF466891.12E-3016113IPR009057Homeodomain-like
SMARTSM007171.6E-131868IPR001005SANT/Myb domain
PfamPF002495.0E-151966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-222073IPR009057Homeodomain-like
CDDcd001675.10E-122166No hitNo description
PROSITE patternPS0017503443IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.667121IPR017930Myb domain
SMARTSM007177.2E-1671119IPR001005SANT/Myb domain
PfamPF002491.2E-1472115IPR001005SANT/Myb domain
CDDcd001671.03E-1174117No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2574120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MARSGGGVEG GGSCGGLKKG PWTQAEDKLL VDHVRRHGEG NWNAVRRETG LQRCGKSCRL  60
RWANHLRPNL RKGPFSPEEE RQILRLHGLI GNKWARISSH LPGRTDNEIK NYWNTRLKRR  120
QRAGLPLYPP DVEREIALLR AQNVNPFADS DGNANASGSL PPPLLYDASN PFALPPTVPS  180
PSGSASPLIN QNYPLLNQMQ GMQQVFHHLA SQQSPQPVFH PHHQDSSGAA ALGHGGFVSA  240
GLPPLPTRPQ AAELPSNQFD SSSSGSGGGL LESLLLGDDH LPRHNHPSMV KVSSMPALSY  300
SYREPVSSRL PVHGAGSDSD DTSHCLPGED MHHGATWNFT FD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29171205107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387231e-165BT038723.1 Zea mays full-length cDNA clone ZM_BFb0313M23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813892.10.0transcription factor MYB97-like
TrEMBLA0A2S3HH140.0A0A2S3HH14_9POAL; Uncharacterized protein
STRINGSi006555m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.14e-60myb domain protein 33