PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00506.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 640aa    MW: 70095.1 Da    PI: 6.6969
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00506.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06111131526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ +   G+C+ G++C++ H+
  Pahal.D00506.1 111 ECNMYKM-GFCPNGPSCRYKHV 131
                     6666666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2025279IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-55278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-55379IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.59680105IPR000571Zinc finger, CCCH-type
SMARTSM003560.0180106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934106133IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042108132IPR000571Zinc finger, CCCH-type
PfamPF041466.9E-44241375IPR007275YTH domain
PROSITE profilePS5088257.393241376IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEDGDLSFDF EGGLDSAPAV GGPVPSSADP GAGGGGGGDG PGMHGRGRGR GSYRQTVCRH  60
WLRGLCMKGD ACGFLHQFDK ARMPVCRFFR DFGECREPDC AYKHSYDDVK ECNMYKMGFC  120
PNGPSCRYKH VKLPGPPPPV EEVLQKILQM RSFNRYGQNR NNNYNQQGER PQYPQGSGLP  180
NQNVAENATA TAPPTGGQQA QMANQQPPQQ QHKPNTNDQV QGASNGHQTT RIATPLPQGP  240
SRYFIVKSCN RENLEISVQQ GIWATQRSNE AKLNEAFEST ENVILIFSIN RTRHFQGCAK  300
MTSRIGGYIG GGNWKSAHGT AHYGRNFSMQ WLKLCELSFQ KTHHLRNPYN DNLPVKISRD  360
CQELEPFIGE QLASLLYLEP DSELTAMLIA AEAKREEEKA KGVSADEAAD NQDIVLFDDN  420
EEEEEEESEE EEEGSGQESQ GRGRGRGMMW PPQMPMTRGP MMGGRFPPNM IGDGFGFGGG  480
FGMPDPFGMP RGFPPFGGPR FPGDFARGPM PGMAFPGRPP QPFPLGLDMM MGPGRGPMMG  540
GMGMGGPGRP NRPMVMAPFM PPPPPNNRAG KREQRRPGGD RGDRFETASD QGSRGHENTG  600
NSGAEGARSQ PGDRYGRNAL RDDDSESEEE AAPRRSRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A1e-101228404418030-kDa cleavage and polyadenylation specificity factor 30
5zuu_B1e-101228404418030-kDa cleavage and polyadenylation specificity factor 30
5zuu_C1e-101228404418030-kDa cleavage and polyadenylation specificity factor 30
5zuu_D1e-101228404418030-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3655420.0AK365542.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812461.10.0zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A2S3HH220.0A0A2S3HH22_9POAL; Uncharacterized protein
STRINGSb10g027200.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428