PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00494.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 302aa MW: 33690.1 Da PI: 7.8415

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00494.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.9	1.2e-50	13	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhP+d+elv +yL+kk+ g ++ ++ +vd++k+ePwdLp + + kewyf+s rd+kyatg+r+nrat+sgyWka Pahal.D00494.1 13 LPPGFRFHPRDDELVLDYLAKKLGGGGgggsvvVS--IygcpTMVDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYATGQRTNRATDSGYWKA 105 79********************99988876633..13343699*********6555689************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Pahal.D00494.1 106 TGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 147 ***99.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-60	3	170	IPR003441	NAC domain
PROSITE profile	PS51005	54.975	13	170	IPR003441	NAC domain
Pfam	PF02365	3.8E-25	14	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MAMNSLSMVE ARLPPGFRFH PRDDELVLDY LAKKLGGGGG GGSVVVSIYG CPTMVDVDLN 60 KCEPWDLPDI ACIGGKEWYF YSLRDRKYAT GQRTNRATDS GYWKATGKDR PISRKGLLVG 120 MRKTLVFYQG RAPKGKKTEW VMHEFRMEGQ GDPMKLPFKE DWVLCRVFYK SRATIAKPPT 180 ESSSYNIDAA TASLPPLIDN YNISFDQPGS VQNLEGYEQV PCFSNNPSQP SSSMNAPLPS 240 SAMGDHQEQQ MGKSIKDVLM SQFSRFDGNV KRETPQQSNF SQDGFEYLAE SGFTQMWNSF 300 G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-49	9	171	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065512	0.0	BT065512.1 Zea mays full-length cDNA clone ZM_BFb0202I06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813786.1	0.0	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	2e-87	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A2S3HH71	0.0	A0A2S3HH71_9POAL; Uncharacterized protein
STRING	Si006975m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1012	37	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	2e-87	NAC domain containing protein 1

Link Out ? help Back to Top
Phytozome	Pahal.D00494.1

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]