PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00365.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARF
Protein Properties Length: 686aa    MW: 74528.9 Da    PI: 7.5866
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00365.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.3e-24124225199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  +++
  Pahal.D00365.1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RTE 214
                     89****************************996555555..8999*********************************************..458 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  Pahal.D00365.1 215 NGDLCVGIRRA 225
                     8999****997 PP
2Auxin_resp115.35.3e-38281364183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a++ a ++++FevvY+Prast+eF+vk+  v++a+++++++GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Pahal.D00365.1 281 ASNLAVSGQPFEVVYYPRASTPEFCVKAGAVRTAMRTQWCAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 364
                     5678899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-37117229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-29119226IPR015300DNA-binding pseudobarrel domain
CDDcd100179.02E-21123224No hitNo description
PfamPF023622.3E-22124225IPR003340B3 DNA binding domain
SMARTSM010193.4E-21124226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999124226IPR003340B3 DNA binding domain
PfamPF065077.0E-33281364IPR010525Auxin response factor
PROSITE profilePS5174521.063599679IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MITFVDSAAM ERARESDKCL DPQLWHACAG GMVQMPPVHS KVYYFPQGHA EHAQGPVDLP  60
AGRVPALVLC RVAAVRFMAD PDTDEVFAKI RLAPVRANEP GYAADADDAM GAGAGAQEDK  120
PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSADPP VQTVLAKDVH GVVWKFRHIY  180
RGTPRRHLLT TGWSTFVNQK KLVAGDSIVF MRTENGDLCV GIRRAKKGGI GGPEFLHQPP  240
PPGGNYGGFS MFLRGEEDGN KMMATRGKVR VRVGPEEVVE ASNLAVSGQP FEVVYYPRAS  300
TPEFCVKAGA VRTAMRTQWC AGMRFKMAFE TEDSSRISWF MGTVSAVQVA DPIRWPNSPW  360
RLLQVAWDEP DLLQNVKRVS PWLVELVSNM PAIHLSPFSP PRKKLCVPMY PELPLEGQFP  420
TPMFHGSPLG RGVGPMCYFP DGTPAGIQGA RHAQFGISLS DLHLNKLQSS LSPHGIHQLD  480
HGMQPRIAAG LIIGHRAARD DISCLLTIGT PQNKKSDAKK TPPQLMLFGK PILTEQQISL  540
GNAAGFPVST PKKSPSDDNA EKTVSNSDVS SPGSNQDGTS SGGAPLCQDS KVLDLGLETG  600
HCKVFLQSED VGRTLDLSDV GSYEELYQRL ADMFGIEKAE LMSHVFYRDA SGALKHTGDK  660
PFSEFTKTAR RLTILTETSS DSLAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-792038551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279650.0KJ727965.1 Zea mays clone pUT6078 ARF transcription factor (ARF21) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811979.10.0auxin response factor 18
RefseqXP_025811980.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2S3HGW70.0A0A2S3HGW7_9POAL; Auxin response factor
STRINGSi005991m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]