PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D00284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 25710.8 Da PI: 8.611 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11 | 0.0013 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Pahal.D00284.1 86 YECKTCNKCFPSFQALGGHRTSH 108 99**********99998888777 PP | |||||||
2 | zf-C2H2 | 11 | 0.0014 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F + L H+r+H Pahal.D00284.1 145 HECSACGATFASGQALGGHMRRH 167 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.11 | 86 | 108 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-9 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.427 | 86 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.1E-8 | 86 | 108 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.1E-8 | 140 | 167 | No hit | No description |
Pfam | PF13912 | 1.0E-11 | 144 | 168 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.889 | 145 | 167 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.041 | 145 | 167 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 147 | 167 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKHRTNKRRR HCSSLPSLAS SSSSRSGSTT TQQEEEDEEA DMAKCLILLA QGPAVVVEPH 60 PPIIMPAPET PRSTSRRCAG VSSSSYECKT CNKCFPSFQA LGGHRTSHNN DKKQQPRRPE 120 QEATAAAVTT TLSLRTAAPG RPAAHECSAC GATFASGQAL GGHMRRHRPL TMSAAVPPES 180 VVTADDSSNS NGRLLLLLQE RSAGGNHHVN LELDLNLLPA PSTEQEVTSP AKRMHHHFN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811584.1 | 1e-174 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A3L6RWY2 | 1e-140 | A0A3L6RWY2_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J04850.1.p | 1e-135 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 2e-28 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D00284.1 |