PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00237.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 441aa    MW: 47806.5 Da    PI: 6.8485
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00237.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-1764108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
   Pahal.D00237.1  64 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 108
                      789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.65E-1658112IPR009057Homeodomain-like
PROSITE profilePS5129422.05659113IPR017930Myb domain
TIGRFAMsTIGR015577.1E-1662111IPR006447Myb domain, plants
SMARTSM007171.6E-1463111IPR001005SANT/Myb domain
PfamPF002491.2E-1464107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1064104IPR009057Homeodomain-like
CDDcd001671.19E-1166109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MASMVQVEVK ERDGLDSSGL PIDKKRLLDA AAKSPLIDDA MQPKEGMDGY PVKVRKPYTI  60
TKQREKWTEE EHEKFLEALK LYGRSWRQIQ EHIGTKTAVQ IRSHAQKFFS KVVREPGASN  120
VIKIPPPRPK RKPLHPYPRK CADSSTMANP AMGQPKLAPI SSSSGSDQEN GSPVSVLSAM  180
PSDAFGSSVS NPSTGCTSPA SSDDGNNVPA LVNEENLLTQ QIEDDQSGQE IKLDNSDGDL  240
SEEDSSSGVQ ETSLKLFGKT VFIPDPKKVC SSDGGRRDGE KRSESSKQEE VSQASSIGGV  300
AAYPAHNGWL LPYHSFQFHM GESGDARISP LHVWWPYYGF PVGHPRGFGM GLHTEGTCES  360
DTGKSPSVES SSDCMSDVQT TAPTNCKVVK EPLGAIQVPE PTLSFELKPS ANSAFVRVKP  420
GSNRGQSVRG FVPYKRCKVE *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.10.0uncharacterized protein LOC101785788
TrEMBLA0A2S3HGI90.0A0A2S3HGI9_9POAL; Uncharacterized protein
STRINGPavir.Db00044.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.16e-41MYB_related family protein