PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00219.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 193aa    MW: 20436.9 Da    PI: 9.0069
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00219.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00147698123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+Cp C++ F      + H+r+H
  Pahal.D00219.1 76 YPCPVCHRLFDAVKAVHGHQRSH 98
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.3E-675146No hitNo description
PfamPF139120.02376100IPR007087Zinc finger, C2H2
SMARTSM003550.667698IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9957698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
PfamPF139125.5E-8124148IPR007087Zinc finger, C2H2
SMARTSM003551.8124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.198124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNGAQVFFYG VAYGSPFLSG GVGGGSGAGA GGSGDEPNRP RRPKSAHEAD AVPAALRKKR  60
PAPRKTKDPA AGEGRYPCPV CHRLFDAVKA VHGHQRSHPE RDWRGMAPPR PPPPVAADGR  120
QYRYACDRCG APFETRQALG GHRASHSGKM GCFWLSRQQQ PAAAAPAAAP PMPVLPFDLN  180
EPAVPEQEDE EE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967303.16e-69zinc finger protein ZAT3
TrEMBLA0A2S3HG471e-135A0A2S3HG47_9POAL; Uncharacterized protein
STRINGPavir.J33608.1.p9e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130102729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-15C2H2-like zinc finger protein