PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00214.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 314aa MW: 34681.4 Da PI: 7.8952

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00214.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.7	1.5e-46	18	145	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevlsk. 95 pGfrFhPt+eel+ +yLk+ ++gkkl++ ++i++v++y+++Pw+Lp ++ +e+ewyfF++rd+k+a g r++r+t++g+Wkatg+d++v ++ Pahal.D00214.1 18 PGFRFHPTEEELLEFYLKQVAHGKKLKF-DIIPTVQLYRHDPWELPGLTRIGEREWYFFVPRDRKQAAgGGRPSRTTERGFWKATGSDRAVRCAa 111 9************************9.99***********8788899********997588*****************987 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+glkktLv+y+grap+g+ktdWvm+eyrl Pahal.D00214.1 112 dPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 145 77788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.941	16	180	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-52	17	180	IPR003441	NAC domain
Pfam	PF02365	3.8E-24	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDERRGASSG GAAELELPGF RFHPTEEELL EFYLKQVAHG KKLKFDIIPT VQLYRHDPWE 60 LPGLTRIGER EWYFFVPRDR KQAAGGGRPS RTTERGFWKA TGSDRAVRCA ADPKRLIGLK 120 KTLVYYEGRA PRGTKTDWVM NEYRLPDVAA DASSSSSAGS GNVVVSSPKE DIVLCKIYRK 180 AVSLKELEQR VAMEELARAS SACTPSVSHN DTADSMSSSD HHQQGGSGGV QGEIMVMGVA 240 IPPASVCCMK KEVMAESTAV LRPATLSLPQ LDVAKQPPAA QQQQEWMQDP FLTQLRSPWM 300 ESWSPYYASV LNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-45	13	180	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003685	1e-126	AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04.
GenBank	AP004685	1e-126	AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10.
GenBank	AP014962	1e-126	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-126	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CU406703	1e-126	CU406703.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C111K18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811820.1	0.0	NAC domain-containing protein 22-like
Swissprot	Q10S65	1e-102	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2S3HG66	0.0	A0A2S3HG66_9POAL; Uncharacterized protein
STRING	Si006994m	1e-170	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	9e-79	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Pahal.D00214.1

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]