PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00186.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 328aa    MW: 35585.5 Da    PI: 4.707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00186.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11160202754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Pahal.D00186.1 160 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 202
                     79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.77E-5146207No hitNo description
PROSITE profilePS5088815.269153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16157223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15160221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9160202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.45E-4255283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MELDEQAFLE EILSLRRDAW DCNAMGDFFS PAAACTAAMD CSFQDRHQPP PTVSVLPTFT  60
ASYGQPQPQP HPAAPGFDCL SEVYGAAAAF GAPNAGDYGA EMGFLDVIEP KAPLAEGGLG  120
VCKVEPGLAE GAGAFGAGAA PPAPASKKKR VEGMPSKNLM AERRRRKRLN DRLSMLRSVV  180
PKISKMDRTS ILGDTIDYMK ELLERIKLLQ EEIDEQQQQQ ETPGVLSVFR ELNPNEMVAR  240
NTPKFDVERK ESGETRVEIY CATKPGLLLS TVSTLENLGL DIQQCVVSCF NDFGMHASCS  300
EMQRERISAD AIKQELFKNA GYGGGCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147167KKRVEGMPSKNLMAERRRRKR
2161168ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429110.0BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds.
GenBankEU9635380.0EU963538.1 Zea mays clone 263876 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812035.10.0transcription factor bHLH93-like
SwissprotQ9LSL13e-68BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A2S3HGH20.0A0A2S3HGH2_9POAL; Uncharacterized protein
STRINGSi006877m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.17e-67beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]