PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00077.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 338aa    MW: 37202.6 Da    PI: 9.9369
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00077.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.53e-23104155355
         G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     r+ Wt eLHe+F++a+e L G + AtP +i++lm+vkgLt +h+ SHLQk+Rl
  Pahal.D00077.4 104 RVTWTVELHEKFLDAIEVL-GDKYATPERIRRLMNVKGLTWKHIGSHLQKHRL 155
                     99*****************.99******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.62799158IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-21101158IPR009057Homeodomain-like
SuperFamilySSF466891.82E-15103159IPR009057Homeodomain-like
PfamPF002492.0E-6104154IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.4E-19104157IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCAHHDEAAL SEHVALGACS HVLKPLDTAS LNTLKQKALE HKSKKATPQG PIPNRTKSRM  60
VSSSTERLQE MLILEGNNLS NPGNSEFEVP EVEKAHGCSK KLGRVTWTVE LHEKFLDAIE  120
VLGDKYATPE RIRRLMNVKG LTWKHIGSHL QKHRLRKQNA KQGGQHQRNA STKLVSELIG  180
SGQTAATTES ITPRVDADIR EAYPSRMWKQ VKEEAALKTY MYTRTSGISR DGTKSVWDEY  240
QKGLQKEFSA SNKRWQQIGL SLSKCQLPVK NNVVVIDGGV SSEAPKAAGE IGYGASVEIS  300
GSSSLSTSLL IKLEITIILK LLANTTMWET LICLKVP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813474.10.0two-component response regulator ARR2-like isoform X2
TrEMBLA0A2S3HGX10.0A0A2S3HGX1_9POAL; Uncharacterized protein
STRINGPavir.Db00207.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.13e-16G2-like family protein