PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00077.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 516aa    MW: 56505.2 Da    PI: 5.2466
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00077.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.68.9e-21200248352
         G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                     r+ Wt eLHe+F++a+e L G + AtP +i++lm+vkgLt +h+ SHLQ 
  Pahal.D00077.1 200 RVTWTVELHEKFLDAIEVL-GDKYATPERIRRLMNVKGLTWKHIGSHLQN 248
                     99*****************.99***************************5 PP
2Response_reg27.41.7e-10131271107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTTS.EHHHHHHHHHHHT...TTSEEEEEESTTTHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempgm.dGlellkeireee...pklpiivvtahgeeeda 86 
                     vl+ dD+p+ + ++ ++l ++g+ +v  +++ + al+ +k +       Dl+l  + + ++  G+ + +e+  +     ++p+i + ah +e+ +
  Pahal.D00077.1  13 VLLLDDNPTSLWIISNMLVESGF-KVIPFQKVDMALDFVKSRAaieeeLDLVLAEVHLRNIaPGSLANSELLHHIlneLQVPVITMCAHHDEAAL 106
                     899********************.8888***********999999999*******9998843455444444333333468*************** PP

                     HHHHHTTESEEEESS--HHHH CS
    Response_reg  87 lealkaGakdflsKpfdpeel 107
                      e + +Ga  ++ Kp d + l
  Pahal.D00077.1 107 SEHVALGACSHVLKPLDTASL 127
                     ***************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-158140IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-1510162No hitNo description
PROSITE profilePS5011021.26812135IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-813128IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.37E-814127No hitNo description
PROSITE profilePS5129411.228195254IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-18197248IPR009057Homeodomain-like
SuperFamilySSF466892.51E-11199248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16200248IPR006447Myb domain, plants
PfamPF002496.5E-6200249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MVEHHPVMGN LSVLLLDDNP TSLWIISNML VESGFKVIPF QKVDMALDFV KSRAAIEEEL  60
DLVLAEVHLR NIAPGSLANS ELLHHILNEL QVPVITMCAH HDEAALSEHV ALGACSHVLK  120
PLDTASLNTL KQKALEHKSK KATPQGPIPN RTKSRMVSSS TERLQEMLIL EGNNLSNPGN  180
SEFEVPEVEK AHGCSKKLGR VTWTVELHEK FLDAIEVLGD KYATPERIRR LMNVKGLTWK  240
HIGSHLQNAK QGGQHQRNAS TKLVSELIGS GQTAATTESI TPRVDADIRE AYPSRMWKQV  300
KEEAALKTYM YTRTSGISRD GTKSVWDEYQ KGLQKEFSAS NKRWQQIGLS LSKCQLPVKN  360
NVVVIDGGVS SEAPKAAGEI GYGASVEISG TMNKVASDLL AFLLSDDLDL IGPSDGLEEQ  420
VSYLMSQLEG SLEQQNLGLE DPLQQNLGLE DPLQVDNAWN KGLESPSPSL INIDGSMAQE  480
ATVQNAPVHN PVMPIAKDDG FWSWSPLAGD IDMPF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813472.10.0two-component response regulator ARR2-like isoform X1
TrEMBLA0A2T7DUB50.0A0A2T7DUB5_9POAL; Uncharacterized protein
STRINGPavir.Db00207.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-25response regulator 2