PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D00055.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 473aa MW: 51758.6 Da PI: 6.5775

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D00055.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.4e-32	267	321	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt eLHerFveav++L G+ekAtPk++l+lmkv+gLt++hvkSHLQkYRl Pahal.D00055.3 267 KSRLRWTLELHERFVEAVNKLEGPEKATPKAVLKLMKVEGLTIYHVKSHLQKYRL 321 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.838	264	324	IPR017930	Myb domain
SuperFamily	SSF46689	8.06E-17	265	321	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-30	265	322	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-24	267	322	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-9	269	320	IPR001005	SANT/Myb domain
Pfam	PF14379	3.9E-22	357	403	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MSSQSVAIGE QIIAPNQIVH ACTSTQTSVH KLFDAKLDHG LLIDDTLSST SQSSNIKTEL 60 IRTSSLSRSL SVNLQKRSPE SDLESPLSHI SHPKFSDPIL SNSSTFCTSL FSSSSKNTDP 120 CRQIGTLPFL PHPPKCEQQV SARQSSSSSL LLNGDTGNAL DEAGKSDDLK DFLTLSGDAS 180 DGSFHGENNT LAFDEQMEFQ FLSEQLGIAI TDNEESPHLD DIYGTPPQLS SLPVSSCSNQ 240 SKQNLGSPVK VQLSSSRSSS DSATTNKSRL RWTLELHERF VEAVNKLEGP EKATPKAVLK 300 LMKVEGLTIY HVKSHLQKYR LAKYLPEPKE DKKASSEDKK AQLGSSSSDS SKTKNLQVAE 360 ALRMQMDVQK QLHEQLEVQR QLQLRIEEHA RYLQKILEEQ QKAGNLSLKA PTKAQAESPE 420 TTSKERSESE GGTTSPRASK NRNPDVDAEC KSPVGSKRTK VQVDPEREAP CS*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MSSQSVAIGE QIIAPNQIVH ACTSTQTSVH KLFDAKLDHG LLIDDTLSST SQSSNIKTEL  60
IRTSSLSRSL SVNLQKRSPE SDLESPLSHI SHPKFSDPIL SNSSTFCTSL FSSSSKNTDP  120
CRQIGTLPFL PHPPKCEQQV SARQSSSSSL LLNGDTGNAL DEAGKSDDLK DFLTLSGDAS  180
DGSFHGENNT LAFDEQMEFQ FLSEQLGIAI TDNEESPHLD DIYGTPPQLS SLPVSSCSNQ  240
SKQNLGSPVK VQLSSSRSSS DSATTNKSRL RWTLELHERF VEAVNKLEGP EKATPKAVLK  300
LMKVEGLTIY HVKSHLQKYR LAKYLPEPKE DKKASSEDKK AQLGSSSSDS SKTKNLQVAE  360
ALRMQMDVQK QLHEQLEVQR QLQLRIEEHA RYLQKILEEQ QKAGNLSLKA PTKAQAESPE  420
TTSKERSESE GGTTSPRASK NRNPDVDAEC KSPVGSKRTK VQVDPEREAP CS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-25	267	324	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184668	1e-172	KF184668.1 Saccharum hybrid cultivar R570 clone BAC 005I10 complete sequence.
GenBank	KF184707	1e-172	KF184707.1 Saccharum hybrid cultivar R570 clone BAC 084G07 complete sequence.
GenBank	KF184833	1e-172	KF184833.1 Saccharum hybrid cultivar R570 clone BAC 001I10 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812859.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812860.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812862.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Refseq	XP_025812863.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
Swissprot	Q6YXZ4	1e-168	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A2S3HGL4	0.0	A0A2S3HGL4_9POAL; Uncharacterized protein
STRING	Pavir.J27649.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.D00055.3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]