PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.D00009.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 363aa MW: 38348.4 Da PI: 4.8217 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.8 | 1.3e-17 | 276 | 312 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt+ Tp++Rrgpdg++tLCnaCGl+++ kgl Pahal.D00009.2 276 CHHCGTSAtaTPMMRRGPDGPRTLCNACGLMWANKGL 312 ******9999***********************9996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 15.243 | 138 | 173 | IPR010399 | Tify domain |
SMART | SM00979 | 6.1E-12 | 138 | 173 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.9E-13 | 141 | 172 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.334 | 200 | 242 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.2E-15 | 200 | 242 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.605 | 270 | 318 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.1E-12 | 270 | 328 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.85E-12 | 274 | 324 | No hit | No description |
CDD | cd00202 | 3.72E-15 | 275 | 318 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.3E-16 | 275 | 317 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.2E-15 | 276 | 312 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 276 | 303 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MSHHDGSKPY QPRRGPERAP QPADEVAAPP PAAVAPAVDH LAAVAAEAEA LNRYTEHQHQ 60 QQQQQLQGHE QVGEEEEDED EEEDEMEDDE DEQEGQDGAV GGEHVPMDAD AAAAAAAAAA 120 AAGAQMDPHA AMVPGAVPPM APNQLTLSFQ GEVYVFDSVS PDKVQAVLLL LGGRELNNAG 180 LANAASSSGA YNKRLNFPHR VASLMRFREK RKERNFDKKI RYTVRKEVAL RMQRNRGQFT 240 SSKPKPDEIA ASEMATADGS PNWGSVEGRP PSAAECHHCG TSATATPMMR RGPDGPRTLC 300 NACGLMWANK GLLRDLSKAP VPLQAVQSAP LLDGGNGSVI GNPGGGLENP ASAMANGHES 360 ST* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812856.1 | 0.0 | GATA transcription factor 20-like isoform X2 | ||||
Swissprot | Q5Z4U5 | 1e-138 | GAT20_ORYSJ; GATA transcription factor 20 | ||||
TrEMBL | A0A2S3HGQ4 | 0.0 | A0A2S3HGQ4_9POAL; Uncharacterized protein | ||||
STRING | Si006750m | 1e-176 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-61 | ZIM-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.D00009.2 |