PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D00009.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 364aa    MW: 38476.5 Da    PI: 4.8217
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D00009.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17276312135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cgt+   Tp++Rrgpdg++tLCnaCGl+++ kgl
  Pahal.D00009.1 276 CHHCGTSAtaTPMMRRGPDGPRTLCNACGLMWANKGL 312
                     ******9999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.243138173IPR010399Tify domain
SMARTSM009796.1E-12138173IPR010399Tify domain
PfamPF062003.9E-13141172IPR010399Tify domain
PROSITE profilePS5101713.334200242IPR010402CCT domain
PfamPF062031.2E-15200242IPR010402CCT domain
PROSITE profilePS501149.605270318IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-12270328IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-12274324No hitNo description
CDDcd002023.65E-15275318No hitNo description
Gene3DG3DSA:3.30.50.102.3E-16275317IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-15276312IPR000679Zinc finger, GATA-type
PROSITE patternPS003440276303IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERAP QPADEVAAPP PAAVAPAVDH LAAVAAEAEA LNRYTEHQHQ  60
QQQQQLQGHE QVGEEEEDED EEEDEMEDDE DEQEGQDGAV GGEHVPMDAD AAAAAAAAAA  120
AAGAQMDPHA AMVPGAVPPM APNQLTLSFQ GEVYVFDSVS PDKVQAVLLL LGGRELNNAG  180
LANAASSSGA YNKRLNFPHR VASLMRFREK RKERNFDKKI RYTVRKEVAL RMQRNRGQFT  240
SSKPKPDEIA ASEMATADGS PNWGSVEGRP PSAAECHHCG TSATATPMMR RGPDGPRTLC  300
NACGLMWANK GLLRDLSKAP VPLQAVQSAP LLDGGQNGSV IGNPGGGLEN PASAMANGHE  360
SST*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812855.10.0GATA transcription factor 20-like isoform X1
SwissprotQ5Z4U51e-137GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A2S3HGP80.0A0A2S3HGP8_9POAL; Uncharacterized protein
STRINGSi006750m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-61ZIM-like 1