PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 33380 Da PI: 9.8342 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 32 | 77 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll +v+q+G+++W++I++ ++ gR++k+c++rw + Pahal.C04939.1 32 KGSWSPEEDTLLTSLVEQHGPHRWSLISAAIP-GRSGKSCRLRWCNQ 77 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 86 | 128 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed l++ a++++G++ W+tIar ++ gRt++++k++w++ Pahal.C04939.1 86 PFTPREDALILAAHARYGNK-WATIARLLP-GRTDNSIKNHWNSN 128 89******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.939 | 27 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-31 | 30 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-16 | 31 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 32 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-25 | 33 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.06E-15 | 34 | 76 | No hit | No description |
SMART | SM00717 | 2.2E-15 | 83 | 131 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.255 | 83 | 133 | IPR017930 | Myb domain |
CDD | cd00167 | 6.95E-13 | 86 | 129 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-23 | 86 | 131 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-15 | 86 | 128 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MERRPDEEAN AANDQPVVVA VATPPTRMMM KKGSWSPEED TLLTSLVEQH GPHRWSLISA 60 AIPGRSGKSC RLRWCNQLSP DVHHRPFTPR EDALILAAHA RYGNKWATIA RLLPGRTDNS 120 IKNHWNSNLR RCRRRAAAAA AAAASTSRGA AAAAGPQPPR RINLLQQQSA ENQPPPVADQ 180 QQCMMMGLAG PNPNNNSTDL LHGTAAAEPP TSLSLSLGPP LPPADPDQAA AADEVVAAAK 240 QALLPAEPPG GMMMKMKAAD LQPSPPLALP HHHQEGNAQL IAAVRQMVRE EVQRACSLMA 300 AAAWAKQGHH R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-37 | 29 | 131 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 3e-37 | 29 | 131 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243228 | 1e-157 | AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807021.1 | 0.0 | transcription factor MYB77-like | ||||
TrEMBL | A0A2S3HFW5 | 0.0 | A0A2S3HFW5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00156.1.p | 2e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 2e-51 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04939.1 |