PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04939.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 312aa    MW: 33380 Da    PI: 9.8342
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04939.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-183277147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd ll  +v+q+G+++W++I++ ++ gR++k+c++rw + 
   Pahal.C04939.1 32 KGSWSPEEDTLLTSLVEQHGPHRWSLISAAIP-GRSGKSCRLRWCNQ 77
                     799*****************************.***********985 PP

2Myb_DNA-binding54.62.5e-1786128347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed l++ a++++G++ W+tIar ++ gRt++++k++w++ 
   Pahal.C04939.1  86 PFTPREDALILAAHARYGNK-WATIARLLP-GRTDNSIKNHWNSN 128
                      89******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9392782IPR017930Myb domain
SuperFamilySSF466896.36E-3130125IPR009057Homeodomain-like
SMARTSM007171.0E-163180IPR001005SANT/Myb domain
PfamPF002491.2E-173277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-253385IPR009057Homeodomain-like
CDDcd001676.06E-153476No hitNo description
SMARTSM007172.2E-1583131IPR001005SANT/Myb domain
PROSITE profilePS5129419.25583133IPR017930Myb domain
CDDcd001676.95E-1386129No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2386131IPR009057Homeodomain-like
PfamPF002497.1E-1586128IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERRPDEEAN AANDQPVVVA VATPPTRMMM KKGSWSPEED TLLTSLVEQH GPHRWSLISA  60
AIPGRSGKSC RLRWCNQLSP DVHHRPFTPR EDALILAAHA RYGNKWATIA RLLPGRTDNS  120
IKNHWNSNLR RCRRRAAAAA AAAASTSRGA AAAAGPQPPR RINLLQQQSA ENQPPPVADQ  180
QQCMMMGLAG PNPNNNSTDL LHGTAAAEPP TSLSLSLGPP LPPADPDQAA AADEVVAAAK  240
QALLPAEPPG GMMMKMKAAD LQPSPPLALP HHHQEGNAQL IAAVRQMVRE EVQRACSLMA  300
AAAWAKQGHH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-37291311103C-Myb DNA-Binding Domain
1msf_C3e-37291311103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432281e-157AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807021.10.0transcription factor MYB77-like
TrEMBLA0A2S3HFW50.0A0A2S3HFW5_9POAL; Uncharacterized protein
STRINGPavir.Cb00156.1.p2e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-51myb domain protein 70